expose busco lineage database parameter

Delphine-L · Aug 13, 2024 · a7c733d · a7c733d
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diff --git a/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/CHANGELOG.md b/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/CHANGELOG.md
@@ -1,5 +1,9 @@
 # Changelog
 
+## [0.2.7] 2024-08-13
+
+- Expose Busco lineage database parameter
+
 ## [0.2.6] 2024-08-05
 
 ### Automatic update

diff --git a/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/README.md b/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/README.md
@@ -10,10 +10,13 @@ Example of trajectory :
 ## Inputs
 
 1. Scaffolded assembly [fasta]
-2. Concatenated HiC forward reads [fastq]
-3. Concatenated HiC reverse reads [fastq]
-4. Restriction enzyme sequence [txt]
-5. Estimated genome size [txt]
+2. Database for busco lineage (recommended: latest)
+3. Busco lineage (recommended: vertebrata)
+4. Concatenated HiC forward reads [fastq]
+5. Concatenated HiC reverse reads [fastq]
+6. Restriction enzyme sequence (recommended for VGP data: Arima Hi-C 2.0)
+7. Estimated genome size [txt]
+
 
 ### Outputs
 

diff --git a/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/Scaffolding-HiC-VGP8-tests.yml b/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/Scaffolding-HiC-VGP8-tests.yml
@@ -16,6 +16,7 @@
       class: File
       location: https://zenodo.org/records/10037496/files/Estimated%20genome%20size%20-%20Parameter%20File.txt?download=1
       filetype: txt
+      Database for Busco Lineage: v5
     Lineage: vertebrata_odb10
     Restriction enzymes: arima2
   outputs: