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Drop runtime stuff
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I guess galaxyproject/galaxy#17678 wasn't
enough.
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@mvdbeek
mvdbeek committed Mar 27, 2024
1 parent c2a75dd commit e0a89f7
Showing 1 changed file with 16 additions and 140 deletions.
156 changes: 16 additions & 140 deletions workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/Purge-duplicate-contigs-VGP6.ga
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Original file line number Diff line number Diff line change
Expand Up @@ -303,16 +303,7 @@
"output_name": "output"
}
},
"inputs": [
{
"description": "runtime parameter for tool Map with minimap2",
"name": "fastq_input"
},
{
"description": "runtime parameter for tool Map with minimap2",
"name": "reference_source"
}
],
"inputs": [],
"label": null,
"name": "Map with minimap2",
"outputs": [
Expand Down Expand Up @@ -364,12 +355,7 @@
"output_name": "output"
}
},
"inputs": [
{
"description": "runtime parameter for tool Purge overlaps",
"name": "function_select"
}
],
"inputs": [],
"label": null,
"name": "Purge overlaps",
"outputs": [
Expand Down Expand Up @@ -510,16 +496,7 @@
"output_name": "split_fasta"
}
},
"inputs": [
{
"description": "runtime parameter for tool Map with minimap2",
"name": "fastq_input"
},
{
"description": "runtime parameter for tool Map with minimap2",
"name": "reference_source"
}
],
"inputs": [],
"label": null,
"name": "Map with minimap2",
"outputs": [
Expand Down Expand Up @@ -739,12 +716,7 @@
"output_name": "integer_param"
}
},
"inputs": [
{
"description": "runtime parameter for tool Purge overlaps",
"name": "function_select"
}
],
"inputs": [],
"label": null,
"name": "Purge overlaps",
"outputs": [
Expand Down Expand Up @@ -865,20 +837,7 @@
"output_name": "alignment_output"
}
},
"inputs": [
{
"description": "runtime parameter for tool Purge overlaps",
"name": "function_select"
},
{
"description": "runtime parameter for tool Purge overlaps",
"name": "function_select"
},
{
"description": "runtime parameter for tool Purge overlaps",
"name": "function_select"
}
],
"inputs": [],
"label": null,
"name": "Purge overlaps",
"outputs": [
Expand Down Expand Up @@ -940,16 +899,7 @@
"output_name": "output"
}
},
"inputs": [
{
"description": "runtime parameter for tool Purge overlaps",
"name": "function_select"
},
{
"description": "runtime parameter for tool Purge overlaps",
"name": "function_select"
}
],
"inputs": [],
"label": null,
"name": "Purge overlaps",
"outputs": [
Expand Down Expand Up @@ -1081,16 +1031,7 @@
"output_name": "output"
}
},
"inputs": [
{
"description": "runtime parameter for tool Busco",
"name": "input"
},
{
"description": "runtime parameter for tool Busco",
"name": "lineage"
}
],
"inputs": [],
"label": null,
"name": "Busco",
"outputs": [
Expand Down Expand Up @@ -1201,12 +1142,7 @@
"output_name": "output"
}
},
"inputs": [
{
"description": "runtime parameter for tool gfastats",
"name": "mode_condition"
}
],
"inputs": [],
"label": null,
"name": "gfastats",
"outputs": [
Expand Down Expand Up @@ -1361,16 +1297,7 @@
"output_name": "out_file1"
}
},
"inputs": [
{
"description": "runtime parameter for tool Map with minimap2",
"name": "fastq_input"
},
{
"description": "runtime parameter for tool Map with minimap2",
"name": "reference_source"
}
],
"inputs": [],
"label": null,
"name": "Map with minimap2",
"outputs": [
Expand Down Expand Up @@ -1424,12 +1351,7 @@
"output_name": "out_file1"
}
},
"inputs": [
{
"description": "runtime parameter for tool Purge overlaps",
"name": "function_select"
}
],
"inputs": [],
"label": null,
"name": "Purge overlaps",
"outputs": [
Expand Down Expand Up @@ -1911,12 +1833,7 @@
"output_name": "integer_param"
}
},
"inputs": [
{
"description": "runtime parameter for tool Purge overlaps",
"name": "function_select"
}
],
"inputs": [],
"label": null,
"name": "Purge overlaps",
"outputs": [
Expand Down Expand Up @@ -2040,16 +1957,7 @@
"output_name": "split_fasta"
}
},
"inputs": [
{
"description": "runtime parameter for tool Map with minimap2",
"name": "fastq_input"
},
{
"description": "runtime parameter for tool Map with minimap2",
"name": "reference_source"
}
],
"inputs": [],
"label": null,
"name": "Map with minimap2",
"outputs": [
Expand Down Expand Up @@ -2111,20 +2019,7 @@
"output_name": "alignment_output"
}
},
"inputs": [
{
"description": "runtime parameter for tool Purge overlaps",
"name": "function_select"
},
{
"description": "runtime parameter for tool Purge overlaps",
"name": "function_select"
},
{
"description": "runtime parameter for tool Purge overlaps",
"name": "function_select"
}
],
"inputs": [],
"label": null,
"name": "Purge overlaps",
"outputs": [
Expand Down Expand Up @@ -2186,16 +2081,7 @@
"output_name": "out_file1"
}
},
"inputs": [
{
"description": "runtime parameter for tool Purge overlaps",
"name": "function_select"
},
{
"description": "runtime parameter for tool Purge overlaps",
"name": "function_select"
}
],
"inputs": [],
"label": null,
"name": "Purge overlaps",
"outputs": [
Expand Down Expand Up @@ -2372,12 +2258,7 @@
"output_name": "output"
}
},
"inputs": [
{
"description": "runtime parameter for tool Merqury",
"name": "mode"
}
],
"inputs": [],
"label": null,
"name": "Merqury",
"outputs": [
Expand Down Expand Up @@ -2507,12 +2388,7 @@
"output_name": "output"
}
},
"inputs": [
{
"description": "runtime parameter for tool gfastats",
"name": "mode_condition"
}
],
"inputs": [],
"label": null,
"name": "gfastats",
"outputs": [
Expand Down

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