Update run_scanpyQC_rna.py to fix scruble merge issue in ingest

Hi this change fixes the issue raised now by @giuliaelgarcia #276
DendrouLab · May 9, 2024 · 441031e · 441031e
1 parent f2888d6
commit 441031e
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/panpipes/python_scripts/run_scanpyQC_rna.py b/panpipes/python_scripts/run_scanpyQC_rna.py
@@ -88,7 +88,7 @@
     doubletscores = pd.concat(doubletscores, keys=sample_ids.sample_id).reset_index(level="sample_id")
     # rename the barcodes to match up qwith what the rna.obs barcodes are
     if len(sample_ids) > 1:
-        doubletscores['barcode'] = doubletscores['barcode'] + '-' + doubletscores['sample_id']
+        doubletscores['barcode'] = doubletscores['barcode'].astype('str') + '-' + doubletscores['sample_id'].astype('str')
     doubletscores = doubletscores.set_index('barcode').drop('sample_id', axis=1)
     # merge with rna.obs
     rna.obs = rna.obs.merge(doubletscores, how="left", left_index=True, right_index=True)