Added link in index.rst

DendrouLab · Feb 28, 2024 · 4784a38 · 4784a38
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diff --git a/docs/yaml_docs/index.rst b/docs/yaml_docs/index.rst
@@ -6,6 +6,7 @@ Workflows configuration files
 
     useful_info_on_yml
     pipeline_ingestion_yml
+    pipeline_preprocess_yml
     pipeline_integration_yml
     spatial_qc
     spatial_preprocess

diff --git a/docs/yaml_docs/pipeline_preprocess_yml.md b/docs/yaml_docs/pipeline_preprocess_yml.md
@@ -44,6 +44,7 @@ Specified by the following three parameters:
 <span class="parameter">condaenv</span> `String` (Path)<br>
     Path to conda environment that should be used to run panpipes.
     Leave blank if running native or your cluster automatically inherits the login node environment.
+    For more information on this, please refer to the detailed explanation [here](https://panpipes-pipelines.readthedocs.io/en/latest/install.html#specifying-conda-environments-to-run-panpipes).
 
 ## General project specifications
 

diff --git a/panpipes/panpipes/pipeline_preprocess/pipeline.yml b/panpipes/panpipes/pipeline_preprocess/pipeline.yml
@@ -15,8 +15,6 @@ resources:
 
 condaenv:
 
-# allows for tweaking where the jobs get submitted, in case there is a special queue for long jobs or you have access to a gpu
-# leave as is if you do not want to use the alternative queues
 
 #-------------------------------
 # General project specifications