Merge pull request #221 from DendrouLab/clr_margins_visualization

Added CLR margins visualization
DendrouLab · Mar 11, 2024 · 55ed14f · 55ed14f
2 parents 9d61bd3 + c25cd09
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diff --git a/docs/img/clr_margins.png b/docs/img/clr_margins.png
diff --git a/docs/usage/normalization_methods.md b/docs/usage/normalization_methods.md
@@ -18,6 +18,8 @@ Additionally, the normalized data can be scaled using scanpy's [sc.pp.scale](htt
 
     *if you come from R, please note that the [margins are transposed](https://images.hindustantimes.com/rf/image_size_630x354/HT/p2/2017/09/21/Pictures/_78c6a162-9e94-11e7-9c3b-8e901839ece0.JPG) in the Python and anndata world*
 
+   <img src="https://github.com/DendrouLab/panpipes/tree/main/docs/img/clr_margins.png" width="65%">
+
 2. dsb using [muon's prot processing](https://muon.readthedocs.io/en/latest/api/generated/muon.prot.pp.html). This method is only applicable when you have raw 10x inputs (see [supported input files](https://panpipes-pipelines.readthedocs.io/en/latest/usage/setup_for_qc_mm.html#supported-input-filetypes)).
 
 ## ATAC
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@@ Expand Up @@
         *if you come from R, please note that the [margins are transposed](https://images.hindustantimes.com/rf/image_size_630x354/HT/p2/2017/09/21/Pictures/_78c6a162-9e94-11e7-9c3b-8e901839ece0.JPG) in the Python and anndata world*
+       <img src="https://github.com/DendrouLab/panpipes/tree/main/docs/img/clr_margins.png" width="65%">
 . dsb using [muon's prot processing](https://muon.readthedocs.io/en/latest/api/generated/muon.prot.pp.html). This method is only applicable when you have raw 10x inputs (see [supported input files](https://panpipes-pipelines.readthedocs.io/en/latest/usage/setup_for_qc_mm.html#supported-input-filetypes)).
     ## ATAC
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