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fix typo in run_preprocess_prot.py
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wlason authored Oct 16, 2024
1 parent 6ea37e9 commit 5dda110
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion panpipes/python_scripts/run_preprocess_prot.py
Original file line number Diff line number Diff line change
Expand Up @@ -110,7 +110,7 @@
sys.exit("The MuData you specified does not contain rna modality. Cannot run dsb")

# the RNA and PROT must intersect - they won't if experimental design included some cells without PROT data
L.info("Checking that only cells with PROT signal present are in the bacground object")
L.info("Checking that only cells with PROT signal present are in the background object")
if all_mdata_bg['rna'].shape[0] != all_mdata_bg['prot'].shape[0]:
mu.pp.intersect_obs(mdata_bg)
all_mdata_bg.update()
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