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kevinrue committed Apr 22, 2024
1 parent 60d6265 commit 65946c0
Showing 1 changed file with 1 addition and 9 deletions.
10 changes: 1 addition & 9 deletions panpipes/panpipes/pipeline_ingest.py
Original file line number Diff line number Diff line change
Expand Up @@ -156,16 +156,8 @@ def load_mudatas(rna_path, outfile,
cmd += " > logs/load_mudatas_%(sample_id)s.log"
# print(cmd)
job_kwargs["job_threads"] = PARAMS['resources_threads_medium']
log_msg = f"Output file '{outfile}' => Log file '{logfile}'"
log_msg = f"TASK: 'load_mudatas'" + f"IN CASE OF ERROR, PLEASE REFER TO : '{logfile}' FOR MORE INFORMATION."
get_logger().info(log_msg)
# get_logger().info(
# "Log"
# "Task: 'load_mudatas'" + "\n" +
# f"sample_id: {sample_id}" + "\n" +
# f"Output file(s): {outfile}" + "\n" +
# f"Log file: {logfile}" + "\n" +
# "In case of error, please refer to the log file(s) above for more information."
# )
P.run(cmd, **job_kwargs)


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