created the troubÃleshooting.md file

DendrouLab · Feb 9, 2024 · 72e5cc0 · 72e5cc0
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+What to do if your pipeline beaks mid-run: 
+
+Sometimes the pipeline will stop because, for example,  a parameter is wrong in the config file, or a path was not
+accurately changed in the yml file. 
+
+Firslty: check the log file to see what went wrong and fix the issue 
+
+Secondly: Before re running make sure to delete any intermediate files that where created in the previous run which
+broke halfway throught, to ensure that you can fully reattempt.