Update integration pipeline.yml

added `run` params for LISI and SCIB
DendrouLab · Nov 14, 2024 · 9462f9c · 9462f9c
1 parent 8387362
commit 9462f9c
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/panpipes/panpipes/pipeline_integration/pipeline.yml b/panpipes/panpipes/pipeline_integration/pipeline.yml
@@ -244,6 +244,11 @@ plotqc:
   atac:
   multimodal: rna:total_counts
 
+#-------------
+# LISI metrics
+#-------------
+lisi:
+  run: True
 
 #-------------
 # scib metrics