Update run_scanpyQC_rna.py

DendrouLab · Nov 1, 2024 · b36d582 · b36d582
1 parent d748a6a
commit b36d582
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/panpipes/python_scripts/run_scanpyQC_rna.py b/panpipes/python_scripts/run_scanpyQC_rna.py
@@ -57,7 +57,7 @@
                     default="mitochondrial,ribosomal",
                     help="which list of genes to use to calc proportion of mapped reads over total,per cell?")
 parser.add_argument("--score_genes",
-                    default="MarkersNeutro",
+                    default=None,
                     help="which list of genes to use to scanpy.tl.score_genes per cell?")
 
 args, opt = parser.parse_known_args()