remove unnecessary condaenv cmd

DendrouLab · Mar 14, 2024 · cae7a9f · cae7a9f
1 parent 5109b66
commit cae7a9f
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diff --git a/.github/workflows/spatial_deconvolution-ci.yml b/.github/workflows/spatial_deconvolution-ci.yml
@@ -78,7 +78,6 @@ jobs:
       - name: Replace template contents in configuration file
         run: |
           cd deconvolution
-          sed -i 's+condaenv:+conda_env: pipeline_env+g' pipeline.yml
           sed -i 's+use_gpu:+use_gpu: False+g' pipeline.yml
           sed -i 's+max_epochs: 400+max_epochs: 50+g' pipeline.yml
 

diff --git a/.github/workflows/spatial_ingestion_merfish-ci.yml b/.github/workflows/spatial_ingestion_merfish-ci.yml
@@ -82,11 +82,6 @@ jobs:
           cd spatial/ingestion_merfish
           curl -o pipeline.yml https://raw.githubusercontent.com/DendrouLab/panpipes-tutorials/main/docs/ingesting_merfish_data/pipeline.yml
 
-      - name: Replace template contents in configuration file
-        run: |
-          cd spatial/ingestion_merfish
-          sed -i 's+condaenv:+conda_env: pipeline_env+g' pipeline.yml
-
       - name: File tree
         if: env.debug == 'true'
         run: tree spatial/ingestion_merfish

diff --git a/.github/workflows/spatial_ingestion_visium-ci.yml b/.github/workflows/spatial_ingestion_visium-ci.yml
@@ -85,11 +85,6 @@ jobs:
           cd spatial/ingestion
           curl -o pipeline.yml https://raw.githubusercontent.com/DendrouLab/panpipes-tutorials/main/docs/ingesting_visium_data/pipeline.yml
 
-      - name: Replace template contents in configuration file
-        run: |
-          cd spatial/ingestion
-          sed -i 's+condaenv:+conda_env: pipeline_env+g' pipeline.yml
-
       - name: File tree
         if: env.debug == 'true'
         run: tree spatial/ingestion