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Update gene_list_format.md mouse path
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bio-la authored Apr 23, 2024
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Expand Up @@ -43,7 +43,7 @@ For a typical usecase, we provide example lists on our [github page](https://git
The human-only cellcycle genes used in [scanpy.score_genes_cell_cycle](https://scanpy.readthedocs.io/en/stable/generated/scanpy.tl.score_genes_cell_cycle.html)
are stored in [resources/cell_cycle_genes.csv](https://github.com/DendrouLab/panpipes/blob/main/panpipes/resources/cell_cycle_genes.tsv)

However, if you are working with mouse data, we supply an alternative cellcycle gene list with murine genes, which can be found in [resources/mouse_cell_cycle_genes.tsv](https://github.com/DendrouLab/panpipes/blob/mouse_cell_cycle/panpipes/resources/mouse_cell_cycle_genes.tsv)
However, if you are working with mouse data, we supply an alternative cellcycle gene list with murine genes, which can be found in [resources/mouse_cell_cycle_genes.tsv](https://github.com/DendrouLab/panpipes/blob/main/panpipes/resources/mouse_cell_cycle_genes.tsv)

Differently from the other custom gene file, the cell cycle file should be a **tab separated file with two columns**:

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