Update pyproject.toml to fix the scirpy version to 0.12.2

[deevdevil88]

fixing the version of scripy==0.12.2 , as after that scirpy moved to awkward arrays and panpipes ingest hasnt been updated yet to work with the new data strucutre implement since the version v0.13.0. Without the fix, the latest version is installed b default which errors when ingesting repeortoire data with panpipes_ingest

[bio-la]

Hi @deevdevil88 this solution downgrades pandas and breaks all the spatial transcriptomic workflows so we need to go down the route of fixing scrpy dependency or using another package (https://github.com/immunomind/immunarch) .

let's chat about implementing a new solution that works with the ingestion (and allows repertoire analyses).

[deevdevil88]

Can we only do this for the non spatial component atleast. As we need to do this currently to make panpipes ingest repertoire and it works fine for non spatial stuff. We have had to downgrade scripy for months for it to work and the rest of the non spatial workflows work fine? As we have tested it. If you don't want to add it here and then we need to let people know atleast Until we fix Devika

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On Tue, 29 Oct 2024, 08:48 Fabiola Curion, ***@***.***> wrote: Hi @deevdevil88 <https://github.com/deevdevil88> this solution downgrades pandas and breaks all the spatial transcriptomic workflows so we need to go down the route of fixing scrpy dependency or using another package ( https://github.com/immunomind/immunarch) . let's chat about implementing a new solution that works with the ingestion (and allows repertoire analyses). — Reply to this email directly, view it on GitHub <#315 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AIBRYERWX4LQH44VZGGY3ETZ55DVJAVCNFSM6AAAAABQQ5ROP6VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDINBTGU4TMMJTG4> . You are receiving this because you were mentioned.Message ID: ***@***.***>