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Merge branch 'dyn-resource'
Docker Image CI #76: Commit a0859da pushed by alpae
December 20, 2023 09:55 15m 30s main
December 20, 2023 09:55 15m 30s
temporary large scale base.config
Docker Image CI #75: Commit 0147023 pushed by sinamajidian
December 20, 2023 08:35 15m 41s main
December 20, 2023 08:35 15m 41s
[WIP] better resource limits
Docker Image CI #74: Commit cb7ae69 pushed by alpae
December 19, 2023 16:12 15m 49s dyn-resource
December 19, 2023 16:12 15m 49s
switch default omamer db to latest LUCA.h5
Docker Image CI #73: Commit 69e5df1 pushed by alpae
December 19, 2023 10:28 15m 57s main
December 19, 2023 10:28 15m 57s
[WIP] dynamic resources for hog_big
Docker Image CI #72: Commit 9cbe7f4 pushed by alpae
December 18, 2023 14:25 15m 30s dyn-resource
December 18, 2023 14:25 15m 30s
[ADD] pairwise orthologs only if less than 25 species
Docker Image CI #71: Commit 92b82d2 pushed by alpae
December 12, 2023 15:01 15m 50s main
December 12, 2023 15:01 15m 50s
update readme
Docker Image CI #70: Commit e61f6eb pushed by sinamajidian
December 12, 2023 13:47 16m 14s dev-sina
December 12, 2023 13:47 16m 14s
Merge remote-tracking branch 'fastoma_git/main' into dev-sina
Docker Image CI #69: Commit 049f416 pushed by sinamajidian
December 12, 2023 13:45 16m 15s dev-sina
December 12, 2023 13:45 16m 15s
[ADD] extract pw relations from orthoxml
Docker Image CI #68: Commit b6910b0 pushed by alpae
December 12, 2023 13:41 16m 1s main
December 12, 2023 13:41 16m 1s
update readme
Docker Image CI #67: Commit 3cbb66f pushed by sinamajidian
December 12, 2023 13:04 15m 51s dev-sina
December 12, 2023 13:04 15m 51s
seed_random in _config.py
Docker Image CI #66: Commit b5f4d4c pushed by sinamajidian
December 12, 2023 10:43 16m 6s dev-sina
December 12, 2023 10:43 16m 6s
seed_random in _config.py
Docker Image CI #65: Commit b5f4d4c pushed by sinamajidian
December 12, 2023 10:41 15m 55s main
December 12, 2023 10:41 15m 55s
[FIX] use actual parameter id_transformer
Docker Image CI #64: Commit 0c82b3b pushed by alpae
December 12, 2023 10:32 15m 46s main
December 12, 2023 10:32 15m 46s
[FIX] use checked/modified species tree in pipeline
Docker Image CI #63: Commit 86d7473 pushed by alpae
December 12, 2023 10:15 15m 51s main
December 12, 2023 10:15 15m 51s
lowSO/fragment-detection is default
Docker Image CI #62: Commit 2017aea pushed by sinamajidian
December 11, 2023 12:47 16m 1s main
December 11, 2023 12:47 16m 1s
lowSO/fragment-detection is default
Docker Image CI #61: Commit 2017aea pushed by sinamajidian
December 11, 2023 12:46 16m 8s dev-sina
December 11, 2023 12:46 16m 8s
check_input adds internal node name. Input to process hog_big/rest is…
Docker Image CI #60: Commit b735dc6 pushed by sinamajidian
December 11, 2023 12:38 15m 53s dev-sina
December 11, 2023 12:38 15m 53s
use randomseed for HOGsubsampling
Docker Image CI #59: Commit 4d19c87 pushed by sinamajidian
December 8, 2023 21:49 15m 54s main
December 8, 2023 21:49 15m 54s
use randomseed for HOGsubsampling
Docker Image CI #58: Commit 4d19c87 pushed by sinamajidian
December 8, 2023 20:43 16m 0s dev-sina
December 8, 2023 20:43 16m 0s
use randomseed for fasttre/mafft/HOGsubsampling
Docker Image CI #57: Commit 19d5269 pushed by sinamajidian
December 8, 2023 20:40 15m 36s dev-sina
December 8, 2023 20:40 15m 36s
Merge remote-tracking branch 'fastoma_git/main' into dev-sina
Docker Image CI #56: Commit 44a7b89 pushed by sinamajidian
December 8, 2023 13:03 16m 58s dev-sina
December 8, 2023 13:03 16m 58s
[FIX] cached wrong exception...
Docker Image CI #55: Commit d36e1ce pushed by alpae
December 8, 2023 12:56 15m 58s main
December 8, 2023 12:56 15m 58s
upadte
Docker Image CI #54: Commit d8e2a77 pushed by sinamajidian
December 8, 2023 12:55 15m 59s dev-sina
December 8, 2023 12:55 15m 59s
id-transform UniProt default
Docker Image CI #53: Commit 3804a95 pushed by sinamajidian
December 8, 2023 12:55 15m 48s dev-sina
December 8, 2023 12:55 15m 48s
[FIX] adding missing dependency networkx
Docker Image CI #52: Commit 9f11d2d pushed by sinamajidian
December 8, 2023 12:54 16m 4s dev-sina
December 8, 2023 12:54 16m 4s
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