check_input adds internal node name. Input to process hog_big/rest is…

… species_tree_checked
DessimozLab · Dec 11, 2023 · b735dc6 · b735dc6
1 parent 4d19c87
commit b735dc6
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/FastOMA.nf b/FastOMA.nf
@@ -315,8 +315,8 @@ workflow {
 
     (rhogs_rest_batches, rhogs_big_batches) = batch_roothogs(omamer_rhogs)
 
-    (pickle_big_rhog, msa_out_big, genetrees_out_rest) = hog_big(rhogs_big_batches.flatten(), species_tree)
-    (pickle_rest_rhog,  msas_out_rest, genetrees_out_test) = hog_rest(rhogs_rest_batches.flatten(), species_tree)
+    (pickle_big_rhog, msa_out_big, genetrees_out_rest) = hog_big(rhogs_big_batches.flatten(), species_tree_checked_)
+    (pickle_rest_rhog,  msas_out_rest, genetrees_out_test) = hog_rest(rhogs_rest_batches.flatten(), species_tree_checked_)
     channel.empty().concat(pickle_big_rhog, pickle_rest_rhog).set{ all_rhog_pickle }
 
     (orthoxml_file, OrthologousGroupsFasta, OrthologousGroups_tsv, rootHOGs_tsv)  = collect_subhogs(all_rhog_pickle.collect(), gene_id_dic_xml, omamer_rhogs, species_tree)

diff --git a/FastOMA/__init__.py b/FastOMA/__init__.py
@@ -1,3 +1,3 @@
 
 __packagename__ = "FastOMA"
-__version__ = "0.1.5.3"
+__version__ = "0.1.5.5"