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sinamajidian authored Dec 25, 2024
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FastOMA
======
FastOMA is a scalable software package to infer orthology relationship.
FastOMA is a scalable software package to infer orthology relationship.

Want to learn more about FastOMA and try it online, check out [FastOMA academy](https://omabrowser.org/oma/academy/module/fastOMA) and FastOMA talk at ISMB 2023 on [YouTube](https://youtu.be/KGetTUMDvlA?si=efeqKKarwpIFgXyN)!
Want to learn more about FastOMA and try it online, check out [FastOMA academy](https://omabrowser.org/oma/academy/module/fastOMA) and FastOMA talk at ISMB 2023 on [YouTube](https://youtu.be/KGetTUMDvlA?si=efeqKKarwpIFgXyN)! And read FastOMA's publication in [Nature Methods](https://www.nature.com/articles/s41592-024-02552-8).

Have questions about FastOMA or want to learn how to get started with comparative genomics? Join our drop-in sessions on the first and third Tuesdays of each month at 3PM CET (9AM ET) to get your questions answered live on [Zoom](https://unil.zoom.us/j/2648825230) !

<div align="center">
<img width="300px" src="./archive/fastOMA_logo.png" alt="FastOMA logo" />
</div>

# Input and Output:

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These are initial gene families that are used in `infer_subhogs` step, which could be split into a few smaller gene families.

## Cite us

Majidian, Sina, Yannis Nevers, Ali Yazdizadeh Kharrazi, Alex Warwick Vesztrocy, Stefano Pascarelli, David Moi, Natasha Glover, Adrian M. Altenhoff, and Christophe Dessimoz. "Orthology inference at scale with FastOMA." bioRxiv (2024): 2024-01. https://www.biorxiv.org/content/10.1101/2024.01.29.577392v1.full
Citation: Majidian, Sina, Yannis Nevers, Ali Yazdizadeh Kharrazi, Alex Warwick Vesztrocy, Stefano Pascarelli, David Moi, Natasha Glover, Adrian M. Altenhoff, and Christophe Dessimoz. "Orthology inference at scale with FastOMA." Nature Methods (2025). https://www.nature.com/articles/s41592-024-02552-8 [Preprint](https://www.biorxiv.org/content/10.1101/2024.01.29.577392v1.full).


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