Merge branch 'fix-deep-copy' into dev

DessimozLab · Jul 31, 2024 · bd470a5 · bd470a5
2 parents ad7ec22 + 3f451d1
commit bd470a5
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/FastOMA/_infer_subhog.py b/FastOMA/_infer_subhog.py
@@ -1,7 +1,6 @@
 import collections
 import csv
 import itertools
-from copy import deepcopy
 from pathlib import Path
 import gzip
 
@@ -436,7 +435,7 @@ def infer_genetree_from_msa(self, msa):
         return genetree
 
     def infer_rooted_genetree(self, gene_tree: TreeNode):
-        genetree = deepcopy(gene_tree)
+        genetree = gene_tree.copy()
         if self.conf.gene_rooting_method == "midpoint":
             r_outgroup = genetree.get_midpoint_outgroup()
             genetree.set_outgroup(r_outgroup)  # print("Midpoint rooting is done for gene tree.")