[FIX] fasta transformer for trembl entries

DessimozLab · Nov 30, 2023 · f9ca2ed · f9ca2ed
1 parent 053a5b0
commit f9ca2ed
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/FastOMA/transformer.py b/FastOMA/transformer.py
@@ -16,7 +16,7 @@ def transform(self, header):
 
 class ExtractUniProtAccessionFastaHeaderTransformer(FastaHeaderTransformer):
     def __init__(self):
-        self._up_re = re.compile(r"[spup]{2}\|(?P<acc>[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2})\|.*")
+        self._up_re = re.compile(r"[sptr]{2}\|(?P<acc>[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2})\|.*")
 
     def transform(self, header):
         m = self._up_re.match(header)