Added alternative base config

conf/base_large.config

@@ -0,0 +1,72 @@
+/*
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+    dessimozlab/FastOMA Nextflow base config file with no resource maximum checking
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+    A 'blank slate' config file, appropriate for general use on most high performance
+    compute environments. Assumes that all software is installed and available on
+    the PATH. Runs in `local` mode - all jobs will be run on the logged in environment.
+    This config does not check for maximum available resources on the partition to allow
+    the scheduling between partitions with different resource limits.
+----------------------------------------------------------------------------------------
+*/
+
+process {
+
+    cpus   = {  1    * task.attempt  }
+    memory = { 6.GB * task.attempt }
+    time   = { 4.h  * task.attempt }
+    shell  = ['/bin/bash', '-euo', 'pipefail']
+
+    //errorStrategy = { task.exitStatus in (130..145) ? 'retry' : 'finish' }
+    errorStrategy = 'retry'
+    maxRetries    = 4
+
+    withLabel:process_single {
+        cpus   = { 1 }
+        memory = { 12.GB * task.attempt }
+        time   = { 4.h   * task.attempt }
+    }
+    withLabel:process_single_big {
+        cpus   = { 2 }
+        memory = { 30.GB * task.attempt  }
+        time   = { 24.h   * task.attempt }
+    }
+    withLabel:process_single_bigger {
+        cpus   = { 2 }
+        memory = { 70.GB * task.attempt  }
+        time   = { 24.h   * task.attempt }
+    }
+    withLabel:process_single_huge {
+        cpus   = { 2 }
+        memory = { 250.GB * task.attempt }
+        time   = { 48.h   * task.attempt }
+    }
+    withLabel:process_low {
+        cpus   = { 2     * task.attempt }
+        memory = { 12.GB * task.attempt }
+        time   = { 4.h   * task.attempt }
+    }
+    withLabel:process_medium {
+        cpus   = { 6     * task.attempt }
+        memory = { 36.GB * task.attempt }
+        time   = { 8.h   * task.attempt }
+    }
+    withLabel:process_high {
+        cpus   = { 12    * task.attempt }
+        memory = { 72.GB * task.attempt }
+        time   = { 16.h  * task.attempt }
+    }
+    withLabel:process_long {
+        time   = { 20.h  * task.attempt }
+    }
+    withLabel:process_high_memory {
+        memory = { 200.GB * task.attempt }
+    }
+    withLabel:error_ignore {
+        errorStrategy = 'ignore'
+    }
+    withLabel:error_retry {
+        errorStrategy = 'retry'
+        maxRetries    = 2
+    }
+}