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fix mamba err on colab
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cactuskid committed Jan 11, 2025
1 parent 5edf007 commit f1aef38
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions notebooks/Foldtree.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -156,8 +156,9 @@
"git clone -q https://github.com/DessimozLab/fold_tree\n",
"#git clone -q https://github.com/DessimozLab/fold_tree --branch foldtreeserver\n",
"\n",
"wget -qnc \"https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh\"\n",
"bash Mambaforge-Linux-x86_64.sh -bfp /usr/local > /dev/null 2>&1\n",
"wget -qnc \"https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-$(uname)-$(uname -m).sh\"\n",
"bash Miniforge3-$(uname)-$(uname -m).sh -bfp /usr/local > /dev/null 2>&1\n",
"\n",
"mamba config --set auto_update_conda false\n",
"\n",
"# Create the foldtree environment\n",
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