Feature overhaul aggregation code (part1)

1_Data_SWInput/SWRuns_InputData_ExperimentalDesign_v07.csv

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+Label,sw,filesin,prodin,siteparamin,soilsin,weathersetupin,cloudin,YearStart,YearEnd,LookupWeatherFolder,LookupClimateTempScenarios,LookupClimatePPTScenarios,LookupShiftedPPTScenarios,LookupShiftedPPTCategory,LookupSnowDensityFromTable,LookupTranspRegionsFromTable,LookupEvapCoeffFromTable,LookupTranspCoeffFromTable_Grass,LookupTranspCoeffFromTable_Shrub,LookupTranspCoeffFromTable_Tree,LookupTranspCoeffFromTable_Forb,LookupCarbonScenarios,PotentialNaturalVegetation_CompositionShrubsC3C4_Paruelo1996,PotentialNaturalVegetation_CompositionShrubs_Fraction,PotentialNaturalVegetation_CompositionC3_Fraction,PotentialNaturalVegetation_CompositionC4_Fraction,PotentialNaturalVegetation_CompositionAnnuals_Fraction,PotentialNaturalVegetation_CompositionForb_Fraction,PotentialNaturalVegetation_CompositionBareGround_Fraction,AdjMonthlyBioMass_Precipitation,AdjMonthlyBioMass_Temperature,AdjRootProfile,RootProfile_C3,RootProfile_C4,RootProfile_Annuals,RootProfile_Shrubs,RootProfile_Forb,Shrub_TotalBiomass_ScalingFactor,Shrub_LiveBiomass_ScalingFactor,Shrub_Litter_ScalingFactor,Grass_TotalBiomass_ScalingFactor,Grass_LiveBiomass_ScalingFactor,Grass_Litter_ScalingFactor,Tree_TotalBiomass_ScalingFactor,Tree_LiveBiomass_ScalingFactor,Tree_Litter_ScalingFactor,Forb_TotalBiomass_ScalingFactor,Forb_LiveBiomass_ScalingFactor,Forb_Litter_ScalingFactor,Vegetation_Biomass_ScalingSeason_AllGrowingORNongrowing,Vegetation_Height_ScalingFactor,PotentialNaturalVegetation_Composition_basedOnReferenceOrScenarioClimate,ClimateScenario_Temp_PerturbationInMeanSeasonalityBothOrNone,ClimateScenario_PPT_PerturbationInMeanSeasonalityBothOrNone,RunoffPercent_fromPondedWater,RunonPercent_fromPondedWater,Imperm_L1,Exclude_ClimateAmbient,Grass_HydRed_OnOff,Shrub_HydRed_OnOff,Tree_HydRed_OnOff,Forb_HydRed_OnOff,SoilTemp_deltaX_cm,SoilTemp_MaxDepth_cm,PET_multiplier,Grass_SWPcrit_MPa,Shrub_SWPcrit_MPa,Tree_SWPcrit_MPa,Forb_SWPcrit_MPa,UseCO2BiomassMultiplier,UseCO2WUEMultiplier,SoilTemp_Flag
+UseInformationToCreateSoilWatRuns,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,1,1,1,1,1,1,0,0,0,0,0,0,1,1,1,1,1,1,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,1,1,1,1,1,1,1
+DefaultSettings,,,,,,,,,,,,,,,Prairie,CONUSSOIL_BSE_EVERY10cm,,SchenkJackson2003_PCdry_grasses,SchenkJackson2003_PCdry_shrubs,FILL,SchenkJackson2003_PCdry_forbs,FILL,1,,,,,,,1,1,1,1,1,1,1,1,,,,,,,,,,,,,,,,,,,,,,,,,,15,990,1,-3.5,-3.9,-2,-2,1,1,0

1_Data_SWInput/SWRuns_InputData_SoilLayers_v9.csv

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+Label,SoilDepth_cm,depth_L1,depth_L2,depth_L3,depth_L4,depth_L5,depth_L6,depth_L7,depth_L8,depth_L9,depth_L10,depth_L11,depth_L12,depth_L13,depth_L14,depth_L15,depth_L16,depth_L17,depth_L18,depth_L19,depth_L20

1_Data_SWInput/SWRuns_InputData_TreatmentDesign_v15.csv

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+Label,sw,filesin,prodin,siteparamin,soilsin,weathersetupin,cloudin,YearStart,YearEnd,LookupWeatherFolder,LookupClimateTempScenarios,LookupClimatePPTScenarios,LookupShiftedPPTScenarios,LookupShiftedPPTCategory,LookupSnowDensityFromTable,LookupTranspRegionsFromTable,LookupEvapCoeffFromTable,LookupTranspCoeffFromTable_Grass,LookupTranspCoeffFromTable_Shrub,LookupTranspCoeffFromTable_Tree,LookupTranspCoeffFromTable_Forb,LookupCarbonScenarios,PotentialNaturalVegetation_CompositionShrubsC3C4_Paruelo1996,PotentialNaturalVegetation_CompositionShrubs_Fraction,PotentialNaturalVegetation_CompositionC3_Fraction,PotentialNaturalVegetation_CompositionC4_Fraction,PotentialNaturalVegetation_CompositionAnnuals_Fraction,PotentialNaturalVegetation_CompositionForb_Fraction,PotentialNaturalVegetation_CompositionBareGround_Fraction,AdjMonthlyBioMass_Precipitation,AdjMonthlyBioMass_Temperature,AdjRootProfile,RootProfile_C3,RootProfile_C4,RootProfile_Annuals,RootProfile_Shrubs,RootProfile_Forbs,Shrub_TotalBiomass_ScalingFactor,Shrub_LiveBiomass_ScalingFactor,Shrub_Litter_ScalingFactor,Grass_TotalBiomass_ScalingFactor,Grass_LiveBiomass_ScalingFactor,Grass_Litter_ScalingFactor,Tree_TotalBiomass_ScalingFactor,Tree_LiveBiomass_ScalingFactor,Tree_Litter_ScalingFactor,Forb_TotalBiomass_ScalingFactor,Forb_LiveBiomass_ScalingFactor,Forb_Litter_ScalingFactor,Vegetation_Biomass_ScalingSeason_AllGrowingORNongrowing,Vegetation_Height_ScalingFactor,PotentialNaturalVegetation_Composition_basedOnReferenceOrScenarioClimate,ClimateScenario_Temp_PerturbationInMeanSeasonalityBothOrNone,ClimateScenario_PPT_PerturbationInMeanSeasonalityBothOrNone,Exclude_ClimateAmbient,MaxTempDepth,UseCO2BiomassMultiplier,UseCO2WUEMultiplier
+UseInformationToCreateSoilWatRuns,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0

1_Data_SWInput/SWRuns_InputMaster_YOURPROJECT_v11.csv

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+Label,site_id,Region,WeatherFolder,X_WGS84,Y_WGS84,ELEV_m,ASPECT,SLOPE,Include_YN

1_Data_SWInput/SoilWat2_defaults/Input/bouteloua.estab

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+bogr	# 4-char name of species
+# soil layer parameters
+2    # number of layers affecting establishment
+10.  # SWP (bars) requirement for germination (top layer)
+15.  # SWP (bars) requirement for establishment (average of top layers)
+# timing parameters in days
+60   # first possible day of germination
+180  # last possible day of germination 
+2    # min number of consecutive "wet" days for germination to occur
+40    # max number of consecutive "dry" days after germination allowing estab 
+5    # min number of consecutive "wet" days after germination before establishment
+15   # min number of days between germination and establishment 
+75   # max number of days between germination and establishment 
+# temperature parameters in C
+5.  # min temp threshold for germination 
+20.  # max temp threshold for germination  
+0.  # min temp threshold for establishment 
+20.  # max temp threshold for establishment  

1_Data_SWInput/SoilWat2_defaults/Input/bromus.estab

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+brte # 4-char name of species
+# soil layer parameters
+3    # number of layers affecting establishment - 45 cm Harris and Hulbert
+10.  # SWP (bars) requirement for germination (top layer) - Harris
+15.  # SWP (bars) requirement for establishment (average of top layers) - Harris
+# timing parameters in days
+200   # first possible day of germination - Hulbert and Harris
+365  # last possible day of germination  - Hulbert
+6    # min number of consecutive "wet" days for germination to occur  - Hurlbert and Harris
+45    # max number of consecutive "dry" days after germination allowing estab - Harris (longtime) 
+6    # min number of consecutive "wet" days after germination before establishment - Harris
+15   # min number of days between germination and establishment  - Hulbert
+90   # max number of days between germination and establishment - Harris and Hulbert
+# temperature parameters in C
+10.  # min temp threshold for germination - Hulbert and Harris
+30.  # max temp threshold for germination - Hulbert and Harris
+3.  # min temp threshold for establishment - Harris
+30.  # max temp threshold for establishment - Harris and Hulbert