Skip to content

Commit

Permalink
Fix main script path in README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
Ge94 authored Jun 27, 2024
1 parent 2520f28 commit e535489
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@ With columns indicating:
* _stats_generation_software_: software_vX.X
* _completeness_: `float`
* _contamination_: `float`
* _rRNA_presence_: `True/False` if 5S, 16S, and 23S genes, and at least 18 tRNA genes, have been detected in the genome
* _rRNA_presence_: `True/False` if all among 5S, 16S, and 23S genes, and at least 18 tRNA genes, have been detected in the genome
* _NCBI_lineage_: full NCBI lineage, either in tax ids (`integers`) or `strings`. Format: x;y;z;...
* _metagenome_: needs to be listed in the taxonomy tree [here](<https://www.ebi.ac.uk/ena/browser/view/408169?show=tax-tree>) (you might need to press "Tax tree - Show" in the right most section of the page)
* _co-assembly_: `True/False`, whether the genome was generated from a co-assembly. N.B. the script only supports co-assemblies generated from the same project.
Expand Down Expand Up @@ -53,7 +53,7 @@ conda activate genome_uploader
You can generate pre-upload files with:

```bash
python genome_upload.py -u UPLOAD_STUDY --genome_info METADATA_FILE (--mags | --bins) --webin WEBIN_ID --password PASSWORD --centre_name CENTRE_NAME [--out] [--force] [--live] [--tpa]
python genomeuploader/genome_upload.py -u UPLOAD_STUDY --genome_info METADATA_FILE (--mags | --bins) --webin WEBIN_ID --password PASSWORD --centre_name CENTRE_NAME [--out] [--force] [--live] [--tpa]
```

where
Expand Down

0 comments on commit e535489

Please sign in to comment.