Code

Project restructure WIP#13

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Merged

Ge94 merged 29 commits intomainEBI-Metagenomics/genome_uploader:mainfrom feature/code-review-mberacocheaEBI-Metagenomics/genome_uploader:feature/code-review-mberacocheaCopy head branch name to clipboardApr 25, 2024

+2,137-1,306

Commits

Commits on Jan 25, 2024

• Project restructure WIP

  mberacochea

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  5fcf179

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• Fix arg parser and move exception to ena.py

  mberacochea

  committed
  56fa1be

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Commits on Feb 2, 2024

• ENV loading prototype

  mberacochea

  committed
  22b5cb5

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• Invert confitional in env loading

  mberacochea

  committed
  d298c7e

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• Missing string interpolation f prefix

  mberacochea

  committed
  4f5388b

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• Add python-dotenv to requirements

  Ge94

  committed
  3980454

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Commits on Feb 3, 2024

• ENA API refactor

  Ge94

  committed
  ff723f3

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Commits on Feb 4, 2024

• Minor fixes - env variables

  Ge94

  committed
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Commits on Feb 13, 2024

• env name change

  Ge94

  committed
  6a0c805

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Commits on Feb 18, 2024

• Solved bug in euks tax resolution

  Ge94

  committed
  cbf1b68

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Commits on Feb 19, 2024

• conflicta in reqs

  KateSakharova

  committed
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• Pin python in the requirements.yml file

  mberacochea

  committed
  fb5d158

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Commits on Feb 20, 2024

• fix lon and lat digits

  KateSakharova

  committed
  e5bc45c

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• rm print lineage

  KateSakharova

  committed
  1eb12b9

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• Merge pull request #14 from EBI-Metagenomics/fix/geography

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  KateSakharova

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  283391e

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Commits on Mar 5, 2024

• add check for missing collection date

  KateSakharova

  committed
  6e5a08a

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• Merge pull request #15 from EBI-Metagenomics/fix/missing-collection-date

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  KateSakharova

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  ce4b46b

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Commits on Apr 4, 2024

• Fixed bugs for euks taxonomy

  

  Metagenomics Production

  committed
  47cb39b

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• Minor bug fix test/live mode

  Ge94

  committed
  9168315

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Commits on Apr 22, 2024

• Minor logic refactor

  Ge94

  committed
  b9f3c71

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Commits on Apr 25, 2024

• Added e2e test support, minor code refactoring

  Ge94

  committed
  abebc69

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• Updated release version

  Ge94

  committed
  e3efbe3

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• Project restructure WIP

  

  mberacochea

  authored and

  Ge94

  committed
  4e0a821

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• ENA API refactor

  Ge94

  committed
  539f255

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• conflicta in reqs

  

  KateSakharova

  authored and

  Ge94

  committed
  eb744cd

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• Solved conflicts

  Ge94

  committed
  9826118

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• Solved conflicts

  

  KateSakharova

  authored and

  Ge94

  committed
  5e8062b

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• Pre-merge fixes

  Ge94

  committed
  d777bc8

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• Pre-merge last fix

  Ge94

  committed
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