Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

CAZyme annotations on MAGs #12

Merged
merged 6 commits into from
Jul 8, 2024
Merged

CAZyme annotations on MAGs #12

merged 6 commits into from
Jul 8, 2024

Conversation

SandyRogers
Copy link
Member

This PR:

  • adds annotations to MAGs, and specific handling for cazy annotations (bar chart, API, TSV, importer)
  • fixes a config bug with code coverage calc
  • adds new MAG features (CAZymes and sample containment) to the docs

@SandyRogers SandyRogers marked this pull request as ready for review July 8, 2024 09:49
Copy link

codecov bot commented Jul 8, 2024

Codecov Report

Attention: Patch coverage is 90.90909% with 5 lines in your changes missing coverage. Please review.

Project coverage is 83.39%. Comparing base (a98c3ce) to head (686a513).

Files Patch % Lines
holofood/filters.py 76.92% 3 Missing ⚠️
holofood/forms.py 96.15% 1 Missing ⚠️
holofood/views.py 80.00% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main      #12      +/-   ##
==========================================
+ Coverage   78.81%   83.39%   +4.58%     
==========================================
  Files          69       28      -41     
  Lines        2695     1813     -882     
==========================================
- Hits         2124     1512     -612     
+ Misses        571      301     -270     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@SandyRogers SandyRogers merged commit 21fd0a0 into main Jul 8, 2024
8 checks passed
@SandyRogers SandyRogers deleted the feature/cazy-annotations branch July 8, 2024 10:47
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant