Update python-publish.yml #25
Workflow file for this run
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| name: Create Release with Images | |
| on: | |
| workflow_dispatch: # Allows manual triggering | |
| push: | |
| tags: | |
| - "*.*.*" # Trigger on version tags | |
| jobs: | |
| create-release: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write # Required for creating and uploading release assets | |
| actions: write # Needed for writing actions (like creating releases) | |
| id-token: write # Required for publishing or creating release assets | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| cache: 'pip' # caching pip dependencies | |
| - name: Install dependencies | |
| run: | | |
| pip install . | |
| - name: Install graphviz | |
| run: sudo apt-get install -y graphviz | |
| - name: Generate Images Folder | |
| run: | | |
| cat kegg_pathways_completeness/pathways_data/all_pathways.txt | tr ':' '\t' | cut -f1 > list_modules.txt | |
| python -m kegg_pathways_completeness.bin.plot_modules_graphs --modules-file list_modules.txt --graphs kegg_pathways_completeness/pathways_data/graphs.pkl --definitions kegg_pathways_completeness/pathways_data/all_pathways.txt -o plots --use-pydot | |
| rm list_modules.txt | |
| - name: Compress Folder into GZIP | |
| run: | | |
| tar -czf plots.tar.gz ./plots | |
| - name: Create GitHub Release | |
| id: create_release | |
| uses: softprops/action-gh-release@v1 | |
| with: | |
| tag_name: ${{ github.ref_name }} | |
| release_name: "Release ${{ github.ref_name }}" | |
| body: "Automatically generated release ${{ github.ref_name }} with images." | |
| draft: false | |
| prerelease: false | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Upload Archive to Release | |
| uses: actions/upload-release-asset@v1 | |
| with: | |
| upload_url: ${{ steps.create_release.outputs.upload_url }} | |
| asset_path: ./plots.tar.gz | |
| asset_name: plots.tar.gz | |
| asset_content_type: application/gzip | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |