lets madness with updates begin #9
Workflow file for this run
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| name: Check KEGG API for new records | |
| on: | |
| #schedule: | |
| # - cron: '0 0 1 * *' # Runs at midnight on the 1st of every month | |
| #workflow_dispatch: # Allows manual trigger | |
| push: | |
| branches: [pypi] | |
| pull_request: | |
| branches: [pypi] | |
| jobs: | |
| check-api: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.x' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| - name: Check API for new records | |
| run: python kegg_pathways_completeness/bin/update_pathways_data/get_modules_list.py | |
| - name: Check if new_modules.txt exists | |
| id: check-file | |
| run: | | |
| if [[ -f "new_modules.txt" ]]; then | |
| echo "file_exists=true" >> $GITHUB_ENV | |
| else | |
| echo "file_exists=false" >> $GITHUB_ENV | |
| fi | |
| - name: Get current date | |
| id: date | |
| run: echo "BRANCH_DATE=$(date +'%Y-%m-%d')" >> $GITHUB_ENV | |
| - name: Commit and push changes | |
| if: env.file_exists == 'true' | |
| run: | | |
| git config --global user.name "github-actions[bot]" | |
| git config --global user.email "github-actions[bot]@users.noreply.github.com" | |
| git config pull.rebase false | |
| git pull origin master | |
| git checkout -b changes-${{ env.BRANCH_DATE }} | |
| git add new_modules.txt | |
| git commit -m "Add new_modules.txt with updates" | |
| git push origin HEAD:changes-${{ env.BRANCH_DATE }} | |
| - name: Create Pull Request | |
| if: env.file_exists == 'true' | |
| uses: peter-evans/create-pull-request@v5 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| branch: changes | |
| title: "Automated update of new_modules.txt" | |
| body: "This PR was created automatically by the GitHub Action." | |
| - name: Assign Reviewer | |
| if: env.file_exists == 'true' | |
| run: | | |
| PR_NUMBER=$(jq .pull_request.number <<< ${{ steps.create-pr.outputs.pull-request-data }}) | |
| curl -X POST -H "Authorization: token ${{ secrets.GITHUB_TOKEN }}" \ | |
| -H "Accept: application/vnd.github.v3+json" \ | |
| https://api.github.com/repos/${{ github.repository }}/pulls/$PR_NUMBER/requested_reviewers \ | |
| -d '{"reviewers":["KateSakharova"]}' |