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EBI-Metagenomics · Jul 2, 2024 · 7d52689 · 7d52689
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diff --git a/kegg_pathways_completeness/bin/make_graphs/get_dot.py b/kegg_pathways_completeness/bin/make_graphs/get_dot.py
@@ -47,4 +47,5 @@ def create_dot(graph, name, pathway):
             for line in list_pathways:
                 line = line.strip()
                 name, pathway = line.split(':')
+                print(name)
                 create_dot(graphs[name], name, pathway)
diff --git a/kegg_pathways_completeness/graphs/dots/M00978.dot b/kegg_pathways_completeness/graphs/dots/M00978.dot
@@ -0,0 +1,15 @@
+digraph G {
+graph [label="M00978
+K01915 K01955+K01956 K00611 K01940 K01755 (K27542,K27545)",fontsize=20];
+node [shape=box,style=filled];
+edge [len=3,color=grey];
+{node [width=.3,height=.3,shape=octagon,style=filled,color=skyblue] 0 1 2 3 4 5 6 7 }
+0 -> 2 [label="K01915 [1/6]"];
+2 -> 4 [label="K01955 [1/12]"];
+3 -> 5 [label="K00611 [1/6]"];
+4 -> 3 [label="K01956 [1/12]"];
+5 -> 6 [label="K01940 [1/6]"];
+6 -> 7 [label="K01755 [1/6]"];
+7 -> 1 [label="K27542 [1/6]"];
+7 -> 1 [label="K27545 [1/6]"];
+}
diff --git a/kegg_pathways_completeness/graphs/graphs.pkl b/kegg_pathways_completeness/graphs/graphs.pkl
diff --git a/kegg_pathways_completeness/graphs/png/M00978.png b/kegg_pathways_completeness/graphs/png/M00978.png
diff --git a/kegg_pathways_completeness/pathways_data/all_pathways.txt b/kegg_pathways_completeness/pathways_data/all_pathways.txt
@@ -479,3 +479,4 @@ M00974:K00544 K00315 (K00306,K00314)
 M00975:K00479+K21832 (((K00309,K00315) (K00301,K00302+K00303+K00304+K00305)),K21833+K21834+K25960+K25961) K00600 (K01752,K01754)
 M00976:K00512 K00070 (K04119,K10207,K13368,K13369,K13370) (K12343,K12344,K12345)
 M00977:K00512 K00070 K12343 (K13369,K00089,K00037) (K04119,K10207)
+M00978:K01915 K01955+K01956 K00611 K01940 K01755 (K27542,K27545)
diff --git a/kegg_pathways_completeness/pathways_data/all_pathways_class.txt b/kegg_pathways_completeness/pathways_data/all_pathways_class.txt
@@ -479,3 +479,4 @@ M00974:Pathway modules; Amino acid metabolism; Serine and threonine metabolism
 M00975:Pathway modules; Amino acid metabolism; Serine and threonine metabolism
 M00976:Pathway modules; Lipid metabolism; Sterol biosynthesis
 M00977:Pathway modules; Lipid metabolism; Sterol biosynthesis
+M00978:Pathway modules; Amino acid metabolism; Arginine and proline metabolism
diff --git a/kegg_pathways_completeness/pathways_data/all_pathways_names.txt b/kegg_pathways_completeness/pathways_data/all_pathways_names.txt
@@ -479,3 +479,4 @@ M00974:Betaine metabolism, animals, betaine => glycine
 M00975:Betaine degradation, bacteria, betaine => pyruvate
 M00976:C19-Steroid hormone biosynthesis, pregnenolone => testosterone => dihydrotestosterone
 M00977:C19-Steroid hormone biosynthesis (androgen backdoor pathway), pregnenolone => androsterone => dihydrotestosterone
+M00977:Ornithine-ammonia cycle