Merge pull request #2121 from EBISPOT/obsolete_measurement_terms

Obsoleted terms, replaced by OBA terms
EBISPOT · Nov 1, 2023 · 165b28e · 165b28e
2 parents aa01e0d + 80cf663
commit 165b28e
Showing 1 changed file with 21 additions and 9 deletions.
diff --git a/src/ontology/efo-edit.owl b/src/ontology/efo-edit.owl
@@ -66016,15 +66016,15 @@ SubClassOf(obo:UBERON_6001780 efo:EFO_0003333)
 
 SubClassOf(obo:UBERON_6005037 efo:EFO_0003333)
 
-# Class: obo:UBERON_6005413 (insect anlage in statu nascendi)
+# Class: obo:UBERON_6005413 (obsolete insect anlage in statu nascendi)
 
 SubClassOf(obo:UBERON_6005413 efo:EFO_0000795)
 
-# Class: obo:UBERON_6005434 (insect visual anlage)
+# Class: obo:UBERON_6005434 (obsolete insect visual anlage)
 
 SubClassOf(obo:UBERON_6005434 efo:EFO_0003333)
 
-# Class: obo:UBERON_6005436 (insect trunk mesoderm anlage)
+# Class: obo:UBERON_6005436 (obsolete insect trunk mesoderm anlage)
 
 SubClassOf(obo:UBERON_6005436 efo:EFO_0003334)
 
@@ -178731,13 +178731,17 @@ AnnotationAssertion(rdfs:label efo:EFO_0010786 "interleukin-10 receptor B measur
 SubClassOf(efo:EFO_0010786 efo:EFO_0007937)
 SubClassOf(efo:EFO_0010786 ObjectSomeValuesFrom(obo:IAO_0000136 obo:UBERON_0000178))
 
-# Class: efo:EFO_0010787 (interleukin-12 subunit B measurement)
+# Class: efo:EFO_0010787 (obsolete_interleukin-12 subunit B measurement)
 
 AnnotationAssertion(obo:IAO_0000115 efo:EFO_0010787 "Quantification of the amount of interleukin-12 subunit B in a sample")
 AnnotationAssertion(obo:IAO_0000117 efo:EFO_0010787 "Annalisa Buniello")
+AnnotationAssertion(obo:IAO_0100001 efo:EFO_0010787 "http://purl.obolibrary.org/obo/OBA_2050349")
+AnnotationAssertion(efo:obsoleted_in_version efo:EFO_0010787 "3.60.0")
+AnnotationAssertion(efo:reason_for_obsolescence efo:EFO_0010787 "Replaced by OBA term http://purl.obolibrary.org/obo/OBA_2050349")
 AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0010787 "PMID:32641083")
 AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0010787 "IL12B")
-AnnotationAssertion(rdfs:label efo:EFO_0010787 "interleukin-12 subunit B measurement")
+AnnotationAssertion(rdfs:label efo:EFO_0010787 "obsolete_interleukin-12 subunit B measurement")
+AnnotationAssertion(owl:deprecated efo:EFO_0010787 "true"^^xsd:boolean)
 SubClassOf(efo:EFO_0010787 efo:EFO_0007937)
 SubClassOf(efo:EFO_0010787 ObjectSomeValuesFrom(obo:IAO_0000136 obo:UBERON_0000178))
 
@@ -194233,12 +194237,16 @@ AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0021571 "PMID:33634981")
 AnnotationAssertion(rdfs:label efo:EFO_0021571 "5'-Deoxy-5'-(methylthio) adenosine measurement")
 SubClassOf(efo:EFO_0021571 efo:EFO_0004725)
 
-# Class: efo:EFO_0021572 (9,10-dihome measurement)
+# Class: efo:EFO_0021572 (obsolete_9,10-dihome measurement)
 
 AnnotationAssertion(obo:IAO_0000115 efo:EFO_0021572 "Quantification of the amount of 9,10-dihome in a sample.")
 AnnotationAssertion(obo:IAO_0000117 efo:EFO_0021572 "Elizabeth Lewis")
+AnnotationAssertion(obo:IAO_0100001 efo:EFO_0021572 "http://purl.obolibrary.org/obo/OBA_2050345")
+AnnotationAssertion(efo:obsoleted_in_version efo:EFO_0021572 "3.60.0")
+AnnotationAssertion(efo:reason_for_obsolescence efo:EFO_0021572 "Replaced by OBA term http://purl.obolibrary.org/obo/OBA_2050345")
 AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0021572 "PMID:33634981")
-AnnotationAssertion(rdfs:label efo:EFO_0021572 "9,10-dihome measurement")
+AnnotationAssertion(rdfs:label efo:EFO_0021572 "obsolete_9,10-dihome measurement")
+AnnotationAssertion(owl:deprecated efo:EFO_0021572 "true"^^xsd:boolean)
 SubClassOf(efo:EFO_0021572 efo:EFO_0004725)
 
 # Class: efo:EFO_0021573 (Adenine measurement)
@@ -208588,12 +208596,16 @@ AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0800623 "PMID:35347128")
 AnnotationAssertion(rdfs:label efo:EFO_0800623 "pristanate measurement")
 SubClassOf(efo:EFO_0800623 efo:EFO_0004725)
 
-# Class: efo:EFO_0800624 (12,13-DiHOME measurement)
+# Class: efo:EFO_0800624 (obsolete_12,13-DiHOME measurement)
 
 AnnotationAssertion(obo:IAO_0000115 efo:EFO_0800624 "Quantification of the amount of 12,13-DiHOME in a sample.")
 AnnotationAssertion(obo:IAO_0000117 efo:EFO_0800624 "Santhi Ramachandran")
+AnnotationAssertion(obo:IAO_0100001 efo:EFO_0800624 "http://purl.obolibrary.org/obo/OBA_2050345")
+AnnotationAssertion(efo:obsoleted_in_version efo:EFO_0800624 "3.60.0")
+AnnotationAssertion(efo:reason_for_obsolescence efo:EFO_0800624 "Replaced by OBA term http://purl.obolibrary.org/obo/OBA_2050345")
 AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0800624 "PMID:35347128")
-AnnotationAssertion(rdfs:label efo:EFO_0800624 "12,13-DiHOME measurement")
+AnnotationAssertion(rdfs:label efo:EFO_0800624 "obsolete_12,13-DiHOME measurement")
+AnnotationAssertion(owl:deprecated efo:EFO_0800624 "true"^^xsd:boolean)
 SubClassOf(efo:EFO_0800624 efo:EFO_0004725)
 
 # Class: efo:EFO_0800625 (arachidate (20:0) measurement)