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Merge pull request #1892 from EBISPOT/3.50.0
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EFO release 3.50.0
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@zoependlington
zoependlington authored Jan 16, 2023
2 parents b27d80d + f1bdd02 commit 2a515a4
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10,469 changes: 1,198 additions & 9,271 deletions ExFactor Ontology release notes.txt
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90 changes: 87 additions & 3 deletions efo-base.owl
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Expand Up @@ -15,7 +15,7 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:patterns="http://www.co-ode.org/patterns#">
<owl:Ontology rdf:about="http://www.ebi.ac.uk/efo/efo-base.owl">
<owl:versionIRI rdf:resource="http://www.ebi.ac.uk/efo/releases/v3.49.0/efo-base.owl"/>
<owl:versionIRI rdf:resource="http://www.ebi.ac.uk/efo/releases/v3.50.0/efo-base.owl"/>
<obo:format-version rdf:datatype="http://www.w3.org/2001/XMLSchema#string">1.4</obo:format-version>
<dc:creator>Gautier Koscielny</dc:creator>
<dc:creator>Laura Huerta Martinez</dc:creator>
Expand All @@ -40,8 +40,8 @@ License. </dc:rights>
<efo:creator>Simon Jupp</efo:creator>
<efo:creator>Sirarat Sarntivijai</efo:creator>
<efo:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Tomasz Adamusiak</efo:creator>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-01-13</rdfs:comment>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">3.49.0</owl:versionInfo>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-01-16</rdfs:comment>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">3.50.0</owl:versionInfo>
</owl:Ontology>


Expand Down Expand Up @@ -2492,6 +2492,24 @@ License. </dc:rights>



<!-- http://purl.obolibrary.org/obo/CHEBI_72509 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_72509"/>



<!-- http://purl.obolibrary.org/obo/CHEBI_72514 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_72514"/>



<!-- http://purl.obolibrary.org/obo/CHEBI_72525 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_72525"/>



<!-- http://purl.obolibrary.org/obo/CHEBI_72737 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_72737"/>
Expand Down Expand Up @@ -488999,6 +489017,72 @@ Use: http://www.ebi.ac.uk/efo/EFO_0021179</efo:reason_for_obsolescence>



<!-- http://www.ebi.ac.uk/efo/EFO_0803336 -->

<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0803336">
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0010118"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_72509"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Quantification of the amount of sphingomyelin 32:0 in a sample.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Santhi Ramachandran</obo:IAO_0000117>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:36209301</oboInOwl:hasDbXref>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">sphingomyelin 32:0 measurement</rdfs:label>
</owl:Class>



<!-- http://www.ebi.ac.uk/efo/EFO_0803337 -->

<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0803337">
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0010118"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_72514"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Quantification of the amount of sphingomyelin 34:1 in a sample.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Santhi Ramachandran</obo:IAO_0000117>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:36209301</oboInOwl:hasDbXref>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">sphingomyelin 34:1 measurement</rdfs:label>
</owl:Class>



<!-- http://www.ebi.ac.uk/efo/EFO_0803338 -->

<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0803338">
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0010118"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_72525"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Quantification of the amount of sphingomyelin 38:3 in a sample.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Santhi Ramachandran</obo:IAO_0000117>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:36209301</oboInOwl:hasDbXref>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">sphingomyelin 38:3 measurement</rdfs:label>
</owl:Class>



<!-- http://www.ebi.ac.uk/efo/EFO_0803339 -->

<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0803339">
<rdfs:subClassOf rdf:resource="http://www.ebi.ac.uk/efo/EFO_0010118"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Quantification of the ratio of sphingomyelin 43:1/ 34:1 in a sample.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Santhi Ramachandran</obo:IAO_0000117>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:36209301</oboInOwl:hasDbXref>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">sphingomyelin 43:1/ 34:1 ratio measurement</rdfs:label>
</owl:Class>



<!-- http://www.ebi.ac.uk/efo/EFO_1000003 -->

<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_1000003">
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14 changes: 7 additions & 7 deletions src/ontology/imports/uberon_import.owl
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Expand Up @@ -28094,7 +28094,7 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001844"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/UBPROP_0000012"/>
<owl:annotatedTarget>sources vary in connection to bony labyrinth</owl:annotatedTarget>
<oboInOwl:external_ontology>XAO</oboInOwl:external_ontology>
<oboInOwl:external_ontology rdf:datatype="http://www.w3.org/2001/XMLSchema#string">XAO</oboInOwl:external_ontology>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001844"/>
Expand Down Expand Up @@ -37428,7 +37428,7 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
<owl:annotatedTarget>Subdivision of skeleton which which consists of all the skeletal elements in in the pectoral and pelvic appendage complexes[cjm].</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Appendicular_skeleton"/>
<oboInOwl:hasDbXref rdf:resource="https://orcid.org/0000-0002-6601-2165"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERONREF:0000003</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>UBERONREF:0000003</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002091"/>
Expand Down Expand Up @@ -37858,7 +37858,7 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002101"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A paired appendage that is evolved from a paired fin. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the girdle and its parts.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERONREF:0000003</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>UBERONREF:0000003</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002101"/>
Expand Down Expand Up @@ -37969,7 +37969,7 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002102"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A (free) limb that is connected to a pectoral girdle. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the pectoral girdle and its parts.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERONREF:0000003</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>UBERONREF:0000003</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002102"/>
Expand Down Expand Up @@ -38003,7 +38003,7 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>free upper limb</owl:annotatedTarget>
<oboInOwl:hasDbXref>FMA:24878</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERONREF:0000003</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>UBERONREF:0000003</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002102"/>
Expand Down Expand Up @@ -38084,7 +38084,7 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
<owl:annotatedTarget>A (free) limb that is connected to a pelvic girdle region. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the pelvic girdle and its parts.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Hindlimb"/>
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Lower_limb"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERONREF:0000003</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>UBERONREF:0000003</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002103"/>
Expand Down Expand Up @@ -38128,7 +38128,7 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>free lower limb</owl:annotatedTarget>
<oboInOwl:hasDbXref>FMA:24879</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERONREF:0000003</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>UBERONREF:0000003</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002103"/>
Expand Down
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