Merge pull request #1517 from EBISPOT/3.41.0

EFO release 3.41.0
EBISPOT · Apr 19, 2022 · de34782 · de34782
2 parents 29f3c24 + 0cf4966
commit de34782
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diff --git a/ExFactor Ontology release notes.txt b/ExFactor Ontology release notes.txt
diff --git a/efo-base.owl b/efo-base.owl
diff --git a/src/ontology/components/gwas_import.owl b/src/ontology/components/gwas_import.owl
diff --git a/src/ontology/imports/cl_import.owl b/src/ontology/imports/cl_import.owl
@@ -327,7 +327,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_0000015"/>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget>Male germ cell is a germ cell that supports male gamete production.</owl:annotatedTarget>
-        <oboInOwl:hasDbXref>https://orcid.org/0000-0001-5208-3432</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://orcid.org/0000-0001-5208-3432</oboInOwl:hasDbXref>
     </owl:Axiom>
 
 
@@ -6161,15 +6161,15 @@ Covers cells actively being cultured or stored in a quiescent state for future u
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO_REF:0000031</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11532393</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:12457618</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref>PMID:15032583</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:15032583</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:15766674</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_0000825"/>
         <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NKP</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:12457618</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref>PMID:15032583</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:15032583</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:15766674</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
@@ -11659,7 +11659,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A hematopoietic oligopotent progenitor cell that has the ability to differentiate into limited cell types but lacks lineage cell markers and self renewal capabilities.</owl:annotatedTarget>
         <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:19022770</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref>https://orcid.org/0000-0001-5208-3432</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://orcid.org/0000-0001-5208-3432</oboInOwl:hasDbXref>
     </owl:Axiom>
 
 
@@ -15378,7 +15378,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u
         <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A CD8-positive, CD4-negative thymocyte that expresses high levels of the alpha-beta T cell receptor and is CD69-positive.</owl:annotatedTarget>
         <oboInOwl:hasDbXref>GOC:tfm</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://www.immgen.org/index_content.html</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref>https://orcid.org/0000-0001-5208-3432</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://orcid.org/0000-0001-5208-3432</oboInOwl:hasDbXref>
     </owl:Axiom>
 
 

diff --git a/src/ontology/imports/fbbt_import.owl b/src/ontology/imports/fbbt_import.owl
@@ -426,7 +426,7 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:DOS</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:VH</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase:FBrf0089570</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref>FlyBase:FBrf0151275</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase:FBrf0151275</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/FBbt_00000461"/>
@@ -482,7 +482,7 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
         <owl:annotatedTarget>Neuropil associated CNS glial cell located along the midline in the ventral nerve cord. There are three to four midline glia per neuromere, in the anterior region, arranged and above (dorsal to) and below (ventral to) the neuropil. These cells originate from a group of 7-8 cells at embryonic stage 13 which are reduced by apoptosis to 3-4 glial cells by embryonic stage 16. These glial cells ensheath the anterior and posterior axon commissures, with cytoplasmic extensions restricted to the midline, covering the medial part of the commissure neuropil. Fine extensions are also observed within the neuropil.</owl:annotatedTarget>
         <oboInOwl:hasDbXref>FlyBase:FBrf0076141</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>FlyBase:FBrf0098773</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref>FlyBase:FBrf0180108</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase:FBrf0180108</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>FlyBase:FBrf0207445</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase:FBrf0214261</oboInOwl:hasDbXref>
     </owl:Axiom>
@@ -555,7 +555,7 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
         <owl:annotatedTarget>Hemocyte of the embryo and larva. Relatively large, irregularly shaped hemocyte (Brehelin, 1982). At the end of the third instar larval stage, plasmatocytes contains numerous inclusions, digitations and pinocytotic vesicles, well developed rough endoplasmic reticulum, Golgi apparatus and small lysosome-like bodies. By the end of the third instar period they also contain numerous phagosomes. Plasmatocytes represent 90-95% of all mature larval hemocytes. They function in the removal of dead cells and microbial pathogens.</owl:annotatedTarget>
         <oboInOwl:hasDbXref>FlyBase:FBrf0037631</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>FlyBase:FBrf0066479</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref>FlyBase:FBrf0134542</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase:FBrf0134542</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/FBbt_00001685"/>
@@ -625,7 +625,7 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
         <oboInOwl:hasDbXref>FlyBase:FBrf0053727</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase:FBrf0064803</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase:FBrf0089570</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref>FlyBase:FBrf0179777</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase:FBrf0179777</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase:FBrf0247015</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
@@ -1200,7 +1200,7 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/FBbt_00005508"/>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget>Embryonic structure from which the mushroom body is derived. The development of the mushroom body proceeds as follows: axonogenesis of embryonic Kenyon cells starts late in embryonic stage 14. The axons from these cells extend towards the lateral protocerebral tract (LTP). During stage 16, a second set of Kenyon cell fibers form a second tract, closely apposed to the first. By late stage 16, both tracts extend anteriorly beyond the LTP to form the distal part of the peduncle. These tracts make a sharp medial turn close to the boundary with the deutocerebrum to form the medial lobe. By late stage 17 the vertical lobe has emerged as a collateral outgrowth from the point where these tracts bend. Finally, the calyx forms near to the end of embryogenesis.</owl:annotatedTarget>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase:FBrf0144836</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>FlyBase:FBrf0144836</oboInOwl:hasDbXref>
     </owl:Axiom>
 
 
@@ -1629,7 +1629,7 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/FBbt_00005565"/>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget>Neuroblast that is a precursor to the larval ventral midline neurons, which are found in the ventralmost part of the ventral nerve cord (Kearney et al., 2004). There are four of these cells per neuromere (Kearney et al., 2004).</owl:annotatedTarget>
-        <oboInOwl:hasDbXref>FlyBase:FBrf0180108</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase:FBrf0180108</oboInOwl:hasDbXref>
     </owl:Axiom>
 
 
@@ -1650,7 +1650,7 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget>Neuron of the embryonic or larval ventral midline. Two sets of neurons can be distinguished: 3 neurons in the ventral region (UMI, VUM interneuron and VUM motorneuron) and 2 in the medial region (MP1 and MNB).</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:MMC</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref>FlyBase:FBrf0180108</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase:FBrf0180108</oboInOwl:hasDbXref>
     </owl:Axiom>
 
 
@@ -2138,7 +2138,7 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/FBbt_00005669"/>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget>Small ganglion of the embryonic stomatogastric nervous system. By stage 16 it is located on the left hand side of the embryo, between the two brain hemispheres and behind the supraesophageal commissure. It is more compact than the paraesophageal ganglion and occupies a more dorsal position. It contains approximately 10-12 neurons.</owl:annotatedTarget>
-        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase:FBrf0078614</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>FlyBase:FBrf0078614</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase:FBrf0089570</oboInOwl:hasDbXref>
     </owl:Axiom>
 
@@ -2307,7 +2307,7 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:DOS</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBC:VH</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase:FBrf0089570</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref>FlyBase:FBrf0151275</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase:FBrf0151275</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/FBbt_00005822"/>
@@ -2471,8 +2471,8 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/FBbt_00016016"/>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget>Unpaired neuron with its cell body found along the midline of the embryonic/larval ventral nerve cord (Fontana and Crews, 2012). There are around 18 of these per segment in the late embryo, which are derived from midline precursors (MP1-6) or the median neuroblast (MNB) (Fontana and Crews, 2012). Two sets of neurons can be distinguished; ventral neurons (including MP3 and VUM neurons) and medial neurons (including MP1 and MNB descendants) (Kearney et al., 2004).</owl:annotatedTarget>
-        <oboInOwl:hasDbXref>FlyBase:FBrf0180108</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref>FlyBase:FBrf0219766</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase:FBrf0180108</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase:FBrf0219766</oboInOwl:hasDbXref>
     </owl:Axiom>
 
 
@@ -2737,7 +2737,7 @@ A continuant cannot be part of an occurrent: use &apos;participates in&apos;. An
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
         <owl:annotatedTarget>Primordium of the embryo that will give rise to the adult eye. It corresponds to the most anterior region that develops from the visual primordium.</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase:FBrf0089570</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref>FlyBase:FBrf0151275</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase:FBrf0151275</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/FBbt_10005249"/>