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Merge pull request #2140 from EBISPOT/remove_inadvertently_added_cont…
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Update inadvertently added contributor annotations
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bvarner-ebi authored Nov 22, 2023
2 parents 92864e4 + c2ee520 commit f016e10
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Showing 2 changed files with 2 additions and 13 deletions.
13 changes: 1 addition & 12 deletions src/ontology/efo-edit.owl
Original file line number Diff line number Diff line change
Expand Up @@ -29075,7 +29075,7 @@ AnnotationAssertion(rdfs:label obo:RO_0001025 "located_in")

AnnotationAssertion(rdfs:label obo:RO_0002104 "has_plasma_membrane_part")

# Object Property: obo:RO_0002160 (only_in_taxon)
# Object Property: obo:RO_0002160 (only in taxon)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:20973947") obo:IAO_0000115 obo:RO_0002160 "S only_in_taxon T iff: S SubClassOf in_taxon only T")
AnnotationAssertion(oboInOwl:hasDbXref obo:RO_0002160 "RO:0002160")
Expand Down Expand Up @@ -160837,7 +160837,6 @@ SubClassOf(efo:EFO_0008912 ObjectSomeValuesFrom(obo:BFO_0000055 ObjectIntersecti

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "Wikipedia:Single cell sequencing") obo:IAO_0000115 efo:EFO_0008913 "A protocol that provides the expression profiles of single cells via the isolation and barcoding of single cells and their RNA, reverse transcription, amplification, library generation and sequencing.")
AnnotationAssertion(obo:IAO_0000117 efo:EFO_0008913 "Dani Welter")
AnnotationAssertion(dc:contributor efo:EFO_0008913 "http://orcid.org/0000-0002-1773-2692")
AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0008913 "PMID:19349980")
AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0008913 "scRNA-seq")
AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0008913 "single cell RNA sequencing")
Expand Down Expand Up @@ -203801,15 +203800,13 @@ SubClassOf(efo:EFO_0600096 efo:EFO_0003819)
# Class: efo:EFO_0700000 (spatial proteomics)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41580-018-0094-y") obo:IAO_0000115 efo:EFO_0700000 "An assay that allows for visualization and quantification of proteins or associated antibodies used for evaluating in situ protein spatial distribution.")
AnnotationAssertion(dc:contributor efo:EFO_0700000 <https://orcid.org/0000-0002-1773-2692>)
AnnotationAssertion(terms:date efo:EFO_0700000 "2022-07-01T18:11:08Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label efo:EFO_0700000 "spatial proteomics")
SubClassOf(efo:EFO_0700000 efo:EFO_0001458)

# Class: efo:EFO_0700001 (PhenoCycler-Fusion)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref <https://orcid.org/0000-0003-4389-9821>) Annotation(oboInOwl:hasDbXref <https://www.akoyabio.com/blog/10-reasons-we-are-excited-about-phenocycler-fusion/>) obo:IAO_0000115 efo:EFO_0700001 "A spatial discovery system where whole-slide staining of tissues using pre-designed or custom antibody panels are imaged through automated fluidics (PhenoCycler) and high-speed image acquisition (PhenoImager).")
AnnotationAssertion(dc:contributor efo:EFO_0700001 <https://orcid.org/0000-0002-1773-2692>)
AnnotationAssertion(terms:date efo:EFO_0700001 "2022-07-07T07:53:58Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref <https://www.akoyabio.com/phenocycler/software/>) oboInOwl:hasBroadSynonym efo:EFO_0700001 "CODEX")
AnnotationAssertion(rdfs:label efo:EFO_0700001 "PhenoCycler-Fusion")
Expand All @@ -203819,7 +203816,6 @@ SubClassOf(efo:EFO_0700001 ObjectSomeValuesFrom(obo:BFO_0000051 efo:EFO_0700002)
# Class: efo:EFO_0700002 (PhenoCycler)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref <https://orcid.org/0000-0003-4389-9821>) obo:IAO_0000115 efo:EFO_0700002 "An automated fluidics system that uses oligonucleotide conjugated antibodies for tissue staining, followed by iterative cycles of applying fluorophore-conjugated reporter oligonucletides and gentle washing to generate multiplexed imaging data.")
AnnotationAssertion(dc:contributor efo:EFO_0700002 <https://orcid.org/0000-0002-1773-2692>)
AnnotationAssertion(terms:date efo:EFO_0700002 "2022-07-07T08:44:45Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref <https://www.akoyabio.com/phenocycler/instrument/>) oboInOwl:hasBroadSynonym efo:EFO_0700002 "CODEX")
AnnotationAssertion(rdfs:label efo:EFO_0700002 "PhenoCycler")
Expand All @@ -203828,7 +203824,6 @@ SubClassOf(efo:EFO_0700002 efo:EFO_0700000)
# Class: efo:EFO_0700003 (BD Rhapsody Whole Transcriptome Analysis)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref <https://orcid.org/0000-0002-1196-4871>) Annotation(oboInOwl:hasDbXref "https://www.bdbiosciences.com/content/dam/bdb/marketing-documents/BD-Rhapsody-WTA-Amplification-Kit.pdf") obo:IAO_0000115 efo:EFO_0700003 "A BD Biosciences-based technology that sequences mRNA from the 3' end in an unbiased manner.")
AnnotationAssertion(dc:contributor efo:EFO_0700003 <https://orcid.org/0000-0002-1773-2692>)
AnnotationAssertion(terms:date efo:EFO_0700003 "2022-08-16T11:55:08Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0700003 "BD Rhapsody WTA")
AnnotationAssertion(rdfs:label efo:EFO_0700003 "BD Rhapsody Whole Transcriptome Analysis")
Expand All @@ -203837,15 +203832,13 @@ SubClassOf(efo:EFO_0700003 efo:EFO_0010183)
# Class: efo:EFO_0700004 (BD Rhapsody Targeted mRNA)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref <https://orcid.org/0000-0002-1196-4871>) Annotation(oboInOwl:hasDbXref "https://scomix.bd.com/hc/en-us/articles/360023293851-Targeted-mRNA-Protocols") Annotation(oboInOwl:hasDbXref "https://www.bdbiosciences.com/en-us/products/reagents/single-cell-multiomics/targeted-kits") obo:IAO_0000115 efo:EFO_0700004 "A BD Biosciences-based technology that utilizes multiplex PCR to sequence mRNA from the 3' end of specific genes from a predetermined panel.")
AnnotationAssertion(dc:contributor efo:EFO_0700004 <https://orcid.org/0000-0002-1773-2692>)
AnnotationAssertion(terms:date efo:EFO_0700004 "2022-08-16T12:05:20Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label efo:EFO_0700004 "BD Rhapsody Targeted mRNA")
SubClassOf(efo:EFO_0700004 efo:EFO_0010183)

# Class: efo:EFO_0700005 (Abseq)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref <https://orcid.org/0000-0002-1196-4871>) Annotation(oboInOwl:hasDbXref "PMID:28290550") obo:IAO_0000115 efo:EFO_0700005 "A method that uses DNA-tagged antibodies to quantify proteins in single cells.")
AnnotationAssertion(dc:contributor efo:EFO_0700005 <https://orcid.org/0000-0002-1773-2692>)
AnnotationAssertion(terms:date efo:EFO_0700005 "2022-08-17T11:52:48Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label efo:EFO_0700005 "Abseq")
SubClassOf(efo:EFO_0700005 efo:EFO_0001458)
Expand All @@ -203854,7 +203847,6 @@ SubClassOf(efo:EFO_0700005 efo:EFO_0010183)
# Class: efo:EFO_0700006 (ExSeq)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref <https://orcid.org/0000-0003-4389-9821>) Annotation(oboInOwl:hasDbXref "https://www.science.org/doi/10.1126/science.aax2656") Annotation(rdfs:comment "PMID:33509999") obo:IAO_0000115 efo:EFO_0700006 "A spatial transcriptomics assay that involves physically expanding specimens with polymer- and hydrogel-based systems followed by in situ sequencing.")
AnnotationAssertion(dc:contributor efo:EFO_0700006 <https://orcid.org/0000-0002-1773-2692>)
AnnotationAssertion(terms:date efo:EFO_0700006 "2022-08-24T09:23:12Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:33509999") oboInOwl:hasExactSynonym efo:EFO_0700006 "expansion sequencing")
AnnotationAssertion(rdfs:label efo:EFO_0700006 "ExSeq")
Expand All @@ -203863,15 +203855,13 @@ SubClassOf(efo:EFO_0700006 efo:EFO_0008989)
# Class: efo:EFO_0700007 (targeted ExSeq)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref <https://orcid.org/0000-0003-4389-9821>) Annotation(oboInOwl:hasDbXref "PMID:33509999") obo:IAO_0000115 efo:EFO_0700007 "A spatial transcriptomics assay that involves physically expanding specimens with polymer- and hydrogel-based systems followed by targeted padlock probe hybridization, amplification, and in situ sequencing of padlock barcode.")
AnnotationAssertion(dc:contributor efo:EFO_0700007 <https://orcid.org/0000-0002-1773-2692>)
AnnotationAssertion(terms:date efo:EFO_0700007 "2022-08-24T09:54:36Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label efo:EFO_0700007 "targeted ExSeq")
SubClassOf(efo:EFO_0700007 efo:EFO_0700006)

# Class: efo:EFO_0700008 (untargeted ExSeq)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref <https://orcid.org/0000-0003-4389-9821>) Annotation(oboInOwl:hasDbXref "PMID:33509999") obo:IAO_0000115 efo:EFO_0700008 "A spatial transcriptomics assay that involves physically expanding specimens with polymer- and hydrogel-based systems followed by reverse transcription, amplification, and in situ sequencing of untargeted RNA using FISSEQ.")
AnnotationAssertion(dc:contributor efo:EFO_0700008 <https://orcid.org/0000-0002-1773-2692>)
AnnotationAssertion(terms:date efo:EFO_0700008 "2022-08-24T10:14:27Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label efo:EFO_0700008 "untargeted ExSeq")
SubClassOf(efo:EFO_0700008 efo:EFO_0700006)
Expand All @@ -203880,7 +203870,6 @@ SubClassOf(efo:EFO_0700008 ObjectSomeValuesFrom(obo:BFO_0000051 efo:EFO_0008990)
# Class: efo:EFO_0700009 (transvaginal ultrasound-guided oocyte retrieval)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref <https://orcid.org/0000-0002-7431-4139>) Annotation(oboInOwl:hasDbXref "PMID:2969085") obo:IAO_0000115 efo:EFO_0700009 "A surgical technique used by medical professionals to extract mature eggs directly from an ovary with the guidance of ultrasound imaging.")
AnnotationAssertion(dc:contributor efo:EFO_0700009 <https://orcid.org/0000-0002-1773-2692>)
AnnotationAssertion(terms:date efo:EFO_0700009 "2022-08-31T14:15:29Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasBroadSynonym efo:EFO_0700009 "egg retrieval")
AnnotationAssertion(oboInOwl:hasBroadSynonym efo:EFO_0700009 "oocyte retrieval")
Expand Down
2 changes: 1 addition & 1 deletion src/ontology/efo-idranges.owl
Original file line number Diff line number Diff line change
Expand Up @@ -77,7 +77,7 @@ Datatype: idrange:5
Datatype: idrange:6

Annotations:
allocatedto: "B Varner"
allocatedto: "ad hoc EBI editor"

EquivalentTo:
xsd:integer[>= 0700000 , <= 0799999]
Expand Down

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