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Add method to ensure that hpoa annos are converted to Mondo first #930

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matentzn wants to merge 3 commits into master from mondo-mapping

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matentzn commented Jan 7, 2021

This process takes the hpoa annotations, converts them to Mondo, before they are converted to efo.

@zoependlington we need to sort this before the next efo release I think. This is the problem:

Source comes in with lots of links (phenotypes) to OMIM terms.
we can either chose to translate those to Mondo (this PR), before translating them to EFO.
But this will only work if there is no OMIM / Orphanet at all in EFO (else the annotations to these would be overwritten by Mondo associations, and then subsequently lost).

Can we expect that all diseases in EFO are either Mondo or EFO?

matentzn added 3 commits

January 7, 2021 10:27


          Add method to ensure that hpoa annos are converted to Mondo first

55a383e


          Update Makefile

4da1444


          Update .gitignore

68630f5

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