edrn.bmdb

This package provides the Early Detection Research Network's Biomarker Database (BMDB) or its utilities.

Features

• Standalone RDF generation from a BMDB database.
• And RDF server serving RDF over HTTP.
• Various reports requested by @mryan4.

Examples

You don't want to see any examples of this.

Documentation

Partial documentation for end users can be found in the "docs" folder (probably a blatant lie).

Translations

This product has not been translated into any other languages than US English.

Installation

Try pip or use Docker.

Docker

Now handled by the imaging workflow of GitHub Actions.

Handy Focus BMDB Tables in MySQL

• acl
• auditor
• biomarker_datasets
• biomarker_names
• biomarker_resources
• biomarker_study_data
• biomarker_study_data_publications
• biomarker_study_data_resources
• biomarker_study_data_sensitivities
• biomarkers
• biomarkers_publications
• biomarkers_search
• organ_data
• organ_data_publications
• organ_data_resources
• organ_data_terms
• organs
• paneldata
• people
• person_study
• pis
• publications
• publications_studies
• publications_study_data
• search_aliases
• search_biomarker_names
• search_names_organs
• search_organs
• search_primary_names
• search_view
• sensitivities
• sensitivities_study_data
• sites
• sites_studies
• studies
• study_data
• study_data_resources
• study_resources
• terms
• users

Contribute

• Issue Tracker: https://github.com/EDRN/edrn.bmdb/issues
• Source Code: https://github.com/EDRN/edrn.bmdb

Support

If you are having issues, please let us know. We have a mailing list located at: [email protected]

License

The project is licensed under the ALv2.