Monitoring Norwegian submissions to SRA samples #3
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| name: Monitoring Norwegian submissions to SRA samples | |
| on: | |
| schedule: | |
| - cron: "0 0 * * *" | |
| workflow_dispatch: # Manual trigger | |
| jobs: | |
| fetch-and-plot: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Conda | |
| uses: goanpeca/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| - name: Create and activate Conda environment | |
| run: | | |
| source $HOME/miniconda/etc/profile.d/conda.sh | |
| conda env create -f EBIsearch_environment.yml | |
| conda activate EBIsearch | |
| - name: Run Python script | |
| run: | | |
| source $HOME/miniconda/etc/profile.d/conda.sh | |
| conda activate EBIsearch | |
| python monitoring_sra-samples_EBIsearch.py | |