Skip to content

Update main.yml

Update main.yml #5

Workflow file for this run

name: Monitoring Norwegian submissions to SRA samples
on:
schedule:
- cron: "0 0 * * *"
workflow_dispatch: # Manual trigger
jobs:
fetch-and-plot:
runs-on: ubuntu-latest
steps:
- name: Checkout repository
uses: actions/checkout@v3
- name: Set up Conda environment
uses: conda-incubator/setup-miniconda@v3
with:
auto-update-conda: true
run: |
conda env create -f EBIsearch_environment.yml
conda activate EBIsearch
- name: Run Python script
run: |
conda activate EBIsearch
python monitoring_sra-samples_EBIsearch.py