Monitoring Norwegian submissions to SRA samples #24

	name: Monitoring Norwegian submissions to SRA samples

	on:
	schedule:
	- cron: "0 0 * * *"
	workflow_dispatch:

	jobs:
	default-shell:
	name: Default shell
	runs-on: "ubuntu-latest"
	defaults:
	run:
	shell: bash -el {0}
	steps:
	- uses: actions/checkout@v4
	- uses: conda-incubator/setup-miniconda@v3
	with:
	activate-environment: EBIsearch
	environment-file: EBIsearch_environment.yml
	- run: python monitoring_sra-samples_EBIsearch.py
	- name: Save Plot Artifacts
	uses: actions/upload-artifact@v3
	with:
	name: plot-files
	path: ./plots/
	- uses: actions/checkout@master
	with:
	persist-credentials: false # otherwise, the token used is the GITHUB_TOKEN, instead of your personal token
	fetch-depth: 0 # otherwise, you will fail to push refs to dest repo
	- name: check new files are created
	run: ls -ltr ./plots/
	- name: Create local changes
	run: git add stacked_bar_plot.png
	- name: Commit & Push changes
	uses: actions-js/push@master
	with:
	github_token: ${{ secrets.GITHUB_TOKEN }}

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