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correcting small issue, both cam sima and musica built and ran succes…
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@K20shores
K20shores committed Aug 7, 2023
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12 changes: 0 additions & 12 deletions cime_config/config_component.xml
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<desc>User mods to apply to specific compset matches. </desc>
</entry>

<entry id="CAM_LINKED_LIBS">
<type>char</type>
<valid_values></valid_values>
<default_value>-lmusica -ljsonfortran</default_value>
<group>build_component_cam</group>
<file>env_build.xml</file>
<desc>
CAMSIMA linked libraries. The libraries are built by CAMSIMA's buildlib script and should be included
during linking of the model executable.
</desc>
</entry>

<help>
=========================================
CAM naming conventions
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1 change: 1 addition & 0 deletions docker/Dockerfile.musica
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Expand Up @@ -81,6 +81,7 @@ COPY --chown=cam_sima_user . /home/cam_sima_user/CAM-SIMA

USER cam_sima_user
WORKDIR /home/cam_sima_user/CAM-SIMA
RUN cp docker/config_component.xml.musica cime_config/config_component.xml

# pull the dependencies
RUN ./manage_externals/checkout_externals
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322 changes: 322 additions & 0 deletions docker/config_component.xml.musica
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<?xml version="1.0"?>

<entry_id version="3.0">

<description modifier_mode="*">
<!--
===============
CAM
===============
-->
<desc atm="CAM60[%1PCT][%4xCO2][%CCTS][%CFIRE][%CVBSX][%PORT][%RCO2][%SCAM][%SDYN][%WCCM][%WCMD][%WCSC][%WCTS][%WXIE]">CAM cam6 physics:</desc>
<desc atm="CAM50[%CCTS][%CLB][%PORT][%RCO2][%SCAM][%SDYN][%WCSC][%WCTS]" >CAM cam5 physics:</desc>
<desc atm="CAM40[%PORT][%RCO2][%SCAM][%SDYN][%TMOZ][%WXIE][%WXIED][%WCMD]" >CAM cam4 physics:</desc>
<desc atm="CAM[%ADIAB][%PHYSTEST][%DABIP04][%TJ16][%HS94][%KESSLER][%RCO2][%SPCAMS][%SPCAMCLBS][%SPCAMM][%SPCAMCLBM]">CAM simplified and non-versioned physics:</desc>

<!--
===============
CAM and WACCM Options
===============
-->
<desc option="4xCO2" >abrupt quadrupling of CO2 with other forcings maintained at 1850 piControl levels (CMIP6 DECK abrupt4xCO2 experiment) :</desc>
<desc option="1PCT" >ramped CO2 increasing by 1% per year with other forcings maintained at 1850 piControl levels (CMIP6 DECK 1pctCO2 experiment) :</desc>

<!--
===============
SINGLE COLUMN CAM
===============
-->
<desc atm="CAM[456]0%SCAM" >CAM stand-alone single column mode -- need to define usermods directory with IOP settings:</desc>
<desc atm="%SDYN" >CAM winds and temperature nudged towards prescribed meteorology:</desc>
<!--
===============
CAM Options
===============
-->
<desc option="CCTS" >CAM-Chem troposphere/stratosphere chem with simplified volatility basis set SOA scheme and modal aersols :</desc>
<desc option="CFIRE" >CAM-Chem troposphere/stratosphere chem with simplified volatility basis set SOA scheme and fire emissons :</desc>
<desc option="CLB" >CAM CLUBB - turned on by default in CAM60:</desc>
<desc option="CVBSX" >CAM-Chem troposphere/stratosphere chem with extended volatility basis set SOA scheme and modal aersols :</desc>
<desc option="RCO2" >CAM CO2 ramp: </desc>
<desc option="SPCAMS" >CAM super-parameterized CAM one moment SAM microphysics </desc>
<desc option="SPCAMCLBS" >CAM super-parameterized CAM one moment SAM microphysics using CLUBB </desc>
<desc option="SPCAMM" >CAM super-parameterized CAM double moment m2005 SAM microphysics </desc>
<desc option="SPCAMCLBM" >CAM super-parameterized CAM double moment m2005 SAM microphysics using CLUBB </desc>
<desc option="TMOZ" >CAM tropospheric chemistry with bulk aerosols:</desc>

<!--
===============
WACCM Options
===============
-->
<desc option="WCCM" >WACCM with middle atmosphere chemistry:</desc>
<desc option="WCMD" >WACCM with middle atmosphere chemistry with enhanced D-region ion chemistry:</desc>
<desc option="WXIE" >WACCM-X enhanced ionosphere, transport, and electrodynamics:</desc>
<desc option="WXIED" >WACCM-X enhanced ionosphere, transport, and electrodynamics with D-region ion chemistry:</desc>
<desc option="WCSC" >WACCM specified chemistry:</desc>
<desc option="WCTS" >WACCM with tropospheric, stratospheric, mesospheric, and lower thermospheric chemistry:</desc>

<!--
===============
SIMPLE MODELS Options
===============
-->
<desc option="ADIAB" >CAM dry adiabatic configurarion (no physics forcing):</desc>
<desc option="DABIP04" >CAM dry adiabatic baroclinic instability (Polvani et al., 2004):</desc>
<desc option="TJ16" >CAM moist Held-Suarez forcing (Thatcher and Jablonowski, 2016):</desc>
<desc option="HS94" >CAM dry Held-Suarez forcing (Held and Suarez (1994)):</desc>
<desc option="KESSLER" >CAM moist dynamical core test with Ullrich et al. (2014) baroclinic wave IC, Kessler physics and terminator chemistry:</desc>

<!--
===============
PORT
===============
-->
<desc option="PORT" >CAM Parallel Offline Radiation Tool:</desc>

<!--
===============
Physics Testbed
===============
-->
<desc option="PHYSTEST" >CAM Physics Testbed (no dynamical core):</desc>

</description>

<entry id="COMP_ATM">
<type>char</type>
<valid_values>cam</valid_values>
<default_value>cam</default_value>
<group>case_comp</group>
<file>env_case.xml</file>
<desc>Name of atmospheric component</desc>
</entry>

<entry id="CAM_CPPDEFS">
<type>char</type>
<valid_values></valid_values>
<default_value>UNSET</default_value>
<group>build_component_cam</group>
<file>env_build.xml</file>
<desc>CAM cpp definitions (setup automatically - DO NOT EDIT)</desc>
</entry>

<entry id="CAM_DYCORE">
<type>char</type>
<valid_values>eul,fv,se,none</valid_values>
<default_value>fv</default_value>
<values match="last">
<value grid="a%T[1-9]" >eul</value>
<value grid="a%ne[0-9]">se</value>
</values>
<group>build_component_cam</group>
<file>env_build.xml</file>
<desc>CAM dynamical core</desc>
</entry>

<entry id="CAM_CONFIG_OPTS">
<type>char</type>
<valid_values></valid_values>
<default_value></default_value>
<values match="last" modifier='additive'>
<!-- <value compset="_CAM40">-phys cam4</value>
<value compset="_CAM50">-phys cam5</value>
<value compset="_CAM60">-phys cam6</value> -->

<!-- Modifiers for CAM runs -->
<!-- <value compset="_(CAM50|CAM60)%(CCTS|CFIRE)">-chem trop_strat_mam4_vbs</value>
<value compset="CAM60%CVBSX">-chem trop_strat_mam4_vbsext</value>
<value compset="_CAM50%CLB">-clubb_sgs</value>
<value compset="_(CAM40|CAM50|CAM60)%SCAM">-dyn eul -scam</value>
<value compset="CAM%SPCAMS">-rad camrt -chem none -spcam_nx 32 -spcam_ny 1 -spcam_dx 4000 -spcam_dt 20 -phys spcam_sam1mom </value>
<value compset="CAM%SPCAMCLBS">-rad camrt -chem none -spcam_nx 32 -spcam_ny 1 -spcam_dx 4000 -spcam_dt 20 -phys spcam_sam1mom -spcam_clubb_sgs </value>
<value compset="CAM%SPCAMM">-rad rrtmg -chem trop_mam3 -spcam_nx 32 -spcam_ny 1 -spcam_dx 4000 -spcam_dt 20 -phys spcam_m2005 </value>
<value compset="CAM%SPCAMCLBM">-rad rrtmg -chem trop_mam3 -spcam_nx 32 -spcam_ny 1 -spcam_dx 4000 -spcam_dt 20 -phys spcam_m2005 -spcam_clubb_sgs </value>
<value compset="_CAM40%TMOZ">-chem trop_mozart</value>
<value compset="_CAM.*_BGC%B">-co2_cycle</value> -->

<!-- Match against "%WC" to set defaults for all WACCM cases. -->
<!-- Later settings of "-chem" take precedence over earlier ones. -->
<!-- <value compset="_(CAM50|CAM60)%(WC|CC|CV|CF)">-age_of_air_trcs</value>
<value compset="_CAM40%WCCM">-chem waccm_ma</value>
<value compset="_(CAM50|CAM60)%WCCM">-chem waccm_ma_mam4</value>
<value compset="_(CAM50|CAM60)%WCMD">-chem waccm_mad_mam4</value>
<value compset="_(CAM50|CAM60)%WCSC">-chem waccm_sc_mam4</value>
<value compset="_(CAM50|CAM60)%WCTS">-chem waccm_tsmlt_mam4</value>
<value compset="_CAM40%WX">-waccmx</value>
<value compset="_CAM\d0%WXIE">-ionosphere wxie</value>
<value compset="_CAM40%WXIE">-chem waccm_ma</value>
<value compset="_CAM40%WXIED">-chem waccm_mad</value>
<value compset="_CAM40%WCMD">-chem waccm_mad</value>
<value compset="_CAM60%WX">-chem waccm_ma_mam4 -waccmx</value>
<value compset="_CAM.*%SDYN">-offline_dyn</value>
<value compset="_CAM\d0%SDYN_CLM">-nlev 56</value>
<value compset="_CAM\d0%CC.*%SDYN">-nlev 56</value>
<value compset="_CAM\d0%WC.*%SDYN">-nlev 88</value>
<value compset="_CAM\d0%WX.*%SDYN">-nlev 145</value> -->

<!-- Simple models -->
<!-- <value compset="_CAM%HS94" grid="(%ne[0-9])|(%[0-9.]+x)">-analytic_ic</value>
<value compset="_CAM%ADIAB">-phys adiabatic</value>
<value compset="_CAM%DABIP04">-phys adiabatic</value>
<value compset="_CAM%TJ16">-phys tj2016 -analytic_ic</value>
<value compset="_CAM%HS94">-phys held_suarez</value>
<value compset="_CAM%KESSLER">-phys kessler -chem terminator -analytic_ic</value> -->
<value compset="_CAM%KESSLER">--physics-suites kessler --analytic_ic</value>
<value compset="_CAM%FHS94">--physics-suites held_suarez_1994 --analytic_ic</value>
<value compset="_CAM%PHYSTEST">--dyn none --physics-suites adiabatic</value>

<!-- Aquaplanet -->
<!-- <value compset="_DOCN%SOMAQP">-aquaplanet</value>
<value compset="_DOCN%AQP" >-aquaplanet</value> -->

<!-- PORT -->
<!-- <value compset="%PORT">-offline_drv rad</value> -->
</values>
<group>build_component_cam</group>
<file>env_build.xml</file>
<desc>
CAM configure options, see CAM configure utility for details
Provides option(s) for the CAM configure utility.
CAM_CONFIG_OPTS are normally set as compset variables (e.g., -phys cam4 -chem waccm_ma)
and in general should not be modified for supported compsets. It is recommended that if you want
to modify this value for your experiment, you should use your own user-defined
component sets via using create_newcase with a compset_file argument
</desc>
</entry>

<entry id="CAM_NML_USE_CASE">
<type>char</type>
<valid_values></valid_values>
<default_value>UNSET</default_value>
<values match="last">
<value compset="1850_CAM40" >1850_cam4</value>
<value compset="1850_CAM50" >1850_cam5</value>

<value compset="1850_CAM60" >1850_cam6</value>
<value compset="1850_CAM60%WCTS" >waccm_tsmlt_1850_cam6</value>
<value compset="1850_CAM60%WCCM" >waccm_ma_1850_cam6</value>
<value compset="1850_CAM60%WCSC" >waccm_sc_1850_cam6</value>

<value compset="2000_CAM40%TMOZ" >2000_cam4_trop_chem</value>
<value compset="2000_CAM40%WXIE" >waccmxie_ma_2000_cam4</value>

<value compset="2000_CAM60" >2000_cam6</value>
<value compset="2000_CAM60%WCTS" >waccm_tsmlt_2000_cam6</value>
<value compset="2000_CAM60%WCCM" >waccm_ma_2000_cam6</value>
<value compset="2000_CAM60%WCSC" >waccm_sc_2000_cam6</value>
<value compset="2000_CAM60%CCTS" >2000_trop_strat_vbs_cam6</value>
<value compset="2000_CAM60%WXIE" >waccmx_ma_2000_cam6</value>

<value compset="2000_CAM40_SLND_SICE_DOCN%SOMAQP">aquaplanet_cam4</value>
<value compset="2000_CAM40_SLND_SICE_DOCN%AQP" >aquaplanet_cam4</value>
<value compset="2000_CAM50_SLND_SICE_DOCN%SOMAQP">aquaplanet_cam5</value>
<value compset="2000_CAM50_SLND_SICE_DOCN%AQP" >aquaplanet_cam5</value>
<value compset="2000_CAM60_SLND_SICE_DOCN%SOMAQP">aquaplanet_cam6</value>
<value compset="2000_CAM60_SLND_SICE_DOCN%AQP" >aquaplanet_cam6</value>

<value compset="2010_CAM60" >2010_cam6</value>
<value compset="2010_CAM60%CCTS" >2010_trop_strat_vbs_cam6</value>
<value compset="2010_CAM60%WCTS" >waccm_tsmlt_2010_cam6</value>
<value compset="2010_CAM60%WCSC" >waccm_sc_2010_cam6</value>

<value compset="AMIP_CAM50" >1850-2005_cam5</value>
<value compset="AMIP_CAM40" >1850-2005_cam4</value>

<value compset="HIST_CAM40" >1850-2005_cam4</value>
<value compset="HIST_CAM40.*_BGC%B">1850-2005_cam4_bgc</value>
<value compset="HIST_CAM40%WXIE" >1950-2010_ccmi_refc1_waccmx_ma</value>
<value compset="HIST_CAM50" >1850-2005_cam5</value>
<value compset="HIST_CAM60" >hist_cam6</value>
<value compset="HIST_CAM60%WCTS" >waccm_tsmlt_hist_cam6</value>
<value compset="HIST_CAM60%WCSC" >waccm_sc_hist_cam6</value>
<value compset="HIST_CAM60%WCCM" >waccm_ma_hist_cam6</value>
<value compset="HIST_CAM60%WCMD" >waccm_ma_hist_cam6</value>
<value compset="HIST_CAM40%WCMD" >waccm_ma_hist_cam4</value>
<value compset="HIST_CAM60%CCTS" >hist_trop_strat_vbs_cam6</value>
<value compset="HIST_CAM60%CVBSX" >hist_trop_strat_vbsext_cam6</value>
<value compset="HIST_CAM60%CFIRE" >hist_trop_strat_vbsfire_cam6</value>
<value compset="HIST_CAM60%WXIE" >waccmx_ma_hist_cam6</value>

<value compset="PIPD_CAM50" >1850-PD_cam5</value>

<value compset="RCP2_CAM40" >2005-2100_cam4_rcp26</value>
<value compset="RCP4_CAM40" >2005-2100_cam4_rcp45</value>
<value compset="RCP4_CAM40.*_BGC%B">2005-2100_cam4_rcp45_bgc</value>
<value compset="RCP6_CAM40" >2005-2100_cam4_rcp60</value>
<value compset="RCP8_CAM40" >2005-2100_cam4_rcp85</value>
<value compset="RCP8_CAM40.*_BGC%B">2005-2100_cam4_rcp85_bgc</value>

<value compset="RCP2_CAM50" >2006-2100_cam5_rcp26</value>
<value compset="RCP4_CAM50" >2006-2100_cam5_rcp45</value>
<value compset="RCP6_CAM50" >2006-2100_cam5_rcp60</value>
<value compset="RCP8_CAM50" >2006-2100_cam5_rcp85</value>

<value compset="_CAM40%WXIED%SDYN" >sd_waccmx_ma_cam4</value>
<value compset="_CAM40%WXIE%SDYN" >sd_waccmx_ma_cam4</value>
<value compset="_CAM60%WXIE%SDYN" >sd_waccmx_ma_cam6</value>
<value compset="_CAM60%WCTS%SDYN" >sd_waccm_tsmlt_cam6</value>
<value compset="_CAM60%WCCM%SDYN" >sd_waccm_ma_cam6</value>
<value compset="_CAM60%WCMD%SDYN" >sd_waccm_ma_cam6</value>
<value compset="_CAM40%WCMD%SDYN" >sd_waccm_ma_cam4</value>
<value compset="_CAM60%CCTS%SDYN" >sd_trop_strat_vbs_cam6</value>
<value compset="_CAM60%SDYN_CLM50" >sd_cam6</value>

<value compset="2000_CAM%DABIP04" >dabi_p2004</value>
<value compset="CAM%HS94" >held_suarez_1994</value>
<value compset="CAM%TJ16" >dctest_tj2016</value>
<value compset="CAM%KESSLER" >dctest_baro_kessler</value>

<!-- SCAM defaults to ARM97, all other IOPs are in usermods_dirs -->
<value compset="CAM[456]0%SCAM" >scam_arm97</value>
</values>
<group>run_component_cam</group>
<file>env_run.xml</file>
<desc>CAM namelist use_case. Provides the use_case option for the
CAM build-namelist utility (which is called from
$CASEROOT/Buildconf/cam.buildnml). The CAM build-namelist
leverages groups of namelist options (use cases) that are often
paired with the CAM configure options. These use cases are xml
files located in
$CIMEROOT/../components/atm/cam/bld/namelist_files/use_cases.
In general, this variable should not be modified for supported
component sets (compsets). Recommendation: If you want to
modify this value for your experiment, use your own user-defined
component sets.</desc>
</entry>

<entry id="CAM_USER_MODS">
<type>char</type>
<valid_values></valid_values>
<default_value></default_value>
<values match="last">
<value compset="DOCN%AQP">$SRCROOT/components/cam/cime_config/usermods_dirs/aquap</value>
<value compset="DOCN%SOMAQP">$SRCROOT/components/cam/cime_config/usermods_dirs/aquap</value>
<value compset="CAM[456]0%SCAM" >$SRCROOT/components/cam/cime_config/usermods_dirs/scam_mandatory</value>
</values>
<group>run_component_cam</group>
<file>env_case.xml</file>
<desc>User mods to apply to specific compset matches. </desc>
</entry>

<entry id="CAM_LINKED_LIBS">
<type>char</type>
<valid_values></valid_values>
<default_value>-lmusica -ljsonfortran</default_value>
<group>build_component_cam</group>
<file>env_build.xml</file>
<desc>
CAMSIMA linked libraries. The libraries are built by CAMSIMA's buildlib script and should be included
during linking of the model executable.
</desc>
</entry>

<help>
=========================================
CAM naming conventions
=========================================
</help>

</entry_id>

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