v4.0.0

• Added nf-test capability
• Added github actions CI/CD testing
• Added novel synteny break classifier
• Added aws configuration
• Added nextflow plugin utility
• Added tutorial
• Added nf-core modules
• Added quay.io container capability

v3.0.0

First EcoFlow pipeline release containing major updates in order to make the pipeline nf-core gold standard

Updates include:

• Lighter docker images stored on the ecoflow dockerhub
• updated selection logic usign a ternary operator for tree and go parameters
• removed containers from docker config and left in module files
• added reporting and cleanup option to nextflow config
• moved parameters to nextflow config
• r scripts are now referenced from modules not perl scripts

Synteny_overview

This run completes the full synteny analysis, with GO plots and tree sorting of final plots

Pairwise

This release will work with multiple species. Ideally with 30 or less chromosomes/scaffold.

Only performing the synteny and chromosome mapping final steps.

Results in ./Results folder