Updates for latest tlm_adjoint #288

	name: test-fenics_ice

	on:
	push:
	branches:
	- main
	pull_request:
	branches:
	- main

	concurrency:
	group: ${{ github.workflow }}-${{ github.event.pull_request.number \|\| github.ref }}
	cancel-in-progress: true

	jobs:
	test:
	runs-on: ubuntu-22.04
	timeout-minutes: 60
	env:
	OMP_NUM_THREADS: 1
	OPENBLAS_NUM_THREADS: 1
	steps:
	- name: Checkout fenics_ice
	uses: actions/checkout@v4
	with:
	path: 'fenics_ice'
	- name: Checkout tlm_adjoint
	uses: actions/checkout@v4
	with:
	repository: 'tlm-adjoint/tlm_adjoint'
	path: 'tlm_adjoint'
	- name: Install dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install python3-dolfin python3-git python3-h5py python3-matplotlib python3-pytest-dependency python3-pytest-order python3-netcdf4 python3-numpy python3-pytest python3-pytest-mpi python3-pytest-timeout python3-scipy python3-sympy
	- name: Run tests
	run: \|
	export PYTHONPATH=$PYTHONPATH:$GITHUB_WORKSPACE/tlm_adjoint
	cd fenics_ice
	pytest-3 -v --order-scope=module --timeout=300 --timeout-method=thread
	mpirun -n 2 pytest-3 -v --order-scope=module --timeout=300 --timeout-method=thread
	mpirun -n 2 pytest-3 -m key --key=smith --timeout=300 --timeout-method=thread

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