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jrmaddison committed May 23, 2024
1 parent 19f41b5 commit 134552b
Showing 1 changed file with 24 additions and 62 deletions.
86 changes: 24 additions & 62 deletions .github/workflows/test-fice.yml
Original file line number Diff line number Diff line change
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name: test-fice
name: test-fenics_ice

on:
push:
Expand All @@ -8,73 +8,35 @@ on:
branches:
- main

jobs:

fice-install:
name: Install fenics_ice
runs-on: ubuntu-latest
concurrency:
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
cancel-in-progress: true

jobs:
test:
runs-on: ubuntu-22.04
timeout-minutes: 60
env:
OMP_NUM_THREADS: 1
OPENBLAS_NUM_THREADS: 1
steps:

# Get fice code
- uses: actions/checkout@v2
- name: Checkout fenics_ice
uses: actions/checkout@v4
with:
path: 'fenics_ice'

# Get tlm-adjoint code
- uses: actions/checkout@v2
- name: Checkout tlm_adjoint
uses: actions/checkout@v4
with:
repository: 'tlm-adjoint/tlm_adjoint'
path: 'tlm_adjoint'

# Get micromamba & prerequisites
- name: Setup Mambaforge
uses: conda-incubator/setup-miniconda@v2
env:
# Increase this value to reset cache if environment.yml has not changed
CACHE_NUMBER: 0
with:
miniforge-variant: Mambaforge
miniforge-version: latest
activate-environment: anaconda-client-env
use-mamba: true

- name: Install mamba environment from fenics_ice/environment.yml
# if: steps.cache-conda.outputs.cache-hit != 'true'
uses: mamba-org/provision-with-micromamba@main
with:
environment-name: fenics_ice
environment-file: fenics_ice/environment.yml
channel-priority: strict
#auto-update-conda: true
#use-only-tar-bz2: true # necessary for caching

# Get conda info
- name: mamba info
shell: bash -l {0}
- name: Install dependencies
run: |
micromamba info
micromamba list
which python
python -m pip install scipy==1.9.3
# We install fenics_ice and tlm_adjoint as developing modules
- name: Install repositories as dev modules
shell: bash -l {0}
run: |
ls $GITHUB_WORKSPACE
cd $GITHUB_WORKSPACE/fenics_ice
pip install -e .
cd $GITHUB_WORKSPACE/tlm_adjoint
pip install -e .
micromamba info
# Test fenics ice!
- name: Test fice
shell: bash -l {0}
sudo apt-get update
sudo apt-get install python3-dolfin python3-git python3-h5py python3-matplotlib python3-pytest-dependency python3-pytest-order python3-netcdf4 python3-numpy python3-pytest python3-pytest-timeout python3-scipy python3-sympy
- name: Run tests
run: |
cd $GITHUB_WORKSPACE/fenics_ice/
which python
pytest -v --order-scope=module --color=yes
mpirun -n 2 pytest -v --order-scope=module --color=yes
mpirun -n 2 pytest -m key --key=smith --color=yes
export PYTHONPATH=$PYTHONPATH:$GITHUB_WORKSPACE/tlm_adjoint
cd fenics_ice
pytest-3 -v --order-scope=module --timeout=300 --timeout-method=thread
mpirun -n 2 pytest-3 -v --order-scope=module --timeout=300 --timeout-method=thread
mpirun -n 2 pytest-3 -m key --key=smith --timeout=300 --timeout-method=thread

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