Electrum is a visualization platform for exploring MIDAS protein-metabolite interaction data.
python manage.py runserver
- In Chrome:
- Navigate to:
http://127.0.0.1:8000/
Ctrl+F5
to clear cache
-
Update latest MIDAS database and store at:
static/Electrum/data/MIDAS-latest.txt
-
python electrum-utils.py buildSubstructureReference --output ..\..\data
-
buildEntityDatabase
is a util for name mapping metabolites from MIDAS datasets -
In
settings.py
, setDEBUG = False
andSECURE_SSL_REDIRECT = True
-
In virtual environment with Python installed and activated:
-
conda create --name electron-deploy
-
conda activate electron-deploy
-
conda install python=3.8
-
pip install -r requirements.txt
Electrum
is available via a GPL-3.0 LicenseD3
is provided under an ISC Licensed3-ForceEdgeBundling
is provided under a GPL-2.0 LicensejQuery
is provided under an MIT LicensesaveSvgAsPng
is provided under an MIT Licensestreamsaver
is provided under an MIT License
- Copy
settings.py
to Electrum directory - Change path to find config
- Run
/uufs/chpc.utah.edu/common/home/rutter-website/html/Electrum-django/electrum-deploy-env/bin/gunicorn Electrum-admin.wsgi:application