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fixed sphinx documentation
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ens-ftricomi committed Nov 29, 2023
1 parent 485f47e commit 01d8a07
Showing 1 changed file with 14 additions and 15 deletions.
29 changes: 14 additions & 15 deletions src/python/ensembl/tools/anno/snc_rna_annotation/cmsearch.py
Original file line number Diff line number Diff line change
Expand Up @@ -66,23 +66,22 @@ def run_cmsearch(
) -> None:
"""
Search CM(s) against a Rfam database
:param genome_file : Genome file path.
:param genome_file: Genome file path.
:type genome_file: PathLike
:param output_dir : Working directory path.
:type output_dir : Path
:param rfam_accessions : list of Rfam accessions.
:type rfam_accessions : Path
:param rfam_cm_db : Rfam database with cm models.
:type rfam_cm_db : Path
:param rfam_seed : Rfam seeds file.
:type rfam_seed : Path
:param cmsearch_bin : cmsearch software path.
:type cmsearch_bin : Path
:param output_dir: Working directory path.
:type output_dir: Path
:param rfam_accessions: list of Rfam accessions.
:type rfam_accessions: Path
:param rfam_cm_db: Rfam database with cm models.
:type rfam_cm_db: Path
:param rfam_seed: Rfam seeds file.
:type rfam_seed: Path
:param cmsearch_bin: cmsearch software path.
:type cmsearch_bin: Path
:param rnafold_bin: RNAfold software path.
:type rnafold_bin : Path
:param num_threads : int, number of threads.
:type num_threads :int
:type rnafold_bin: Path
:param num_threads: number of threads.
:type num_threads:int
:return: None
:rtype: None
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