Skip to content

Commit

Permalink
sphinx fixed, exposed all 3 functions
Browse files Browse the repository at this point in the history
  • Loading branch information
ens-ftricomi committed May 28, 2024
1 parent 142fe66 commit 23af962
Showing 1 changed file with 5 additions and 8 deletions.
13 changes: 5 additions & 8 deletions src/python/ensembl/tools/anno/transcriptomic_annotation/star.py
Original file line number Diff line number Diff line change
Expand Up @@ -12,16 +12,13 @@
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

"""
The STAR (Spliced Transcripts Alignment to a Reference) alignment tool is widely used
in genomics research for aligning RNA-seq data to a reference genome.
Dobin A, Davis CA, Schlesinger F, et al. STAR: ultrafast universal RNA-seq aligner.
Bioinformatics. 2013;29(1):15-21. doi:10.1093/bioinformatics/bts635
The STAR (Spliced Transcripts Alignment to a Reference) alignment tool is widely used
in genomics research for aligning RNA-seq data to a reference genome.
Dobin A, Davis CA, Schlesinger F, et al. STAR: ultrafast universal RNA-seq aligner.
Bioinformatics. 2013;29(1):15-21. doi:10.1093/bioinformatics/bts635
"""

__all__ = ["run_star"]
__all__ = ["run_star", "subsample_transcriptomic_data", "run_trimming"]

import argparse
import logging
Expand Down

0 comments on commit 23af962

Please sign in to comment.