fix on stringtie: modified star path

Ensembl · Nov 24, 2023 · bb577e2 · bb577e2
1 parent f22fb77
commit bb577e2
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/python/ensembl/tools/anno/transcriptomic_annotation/stringtie.py b/src/python/ensembl/tools/anno/transcriptomic_annotation/stringtie.py
@@ -65,7 +65,7 @@ def run_stringtie(
 
     stringtie_merge_input_file = stringtie_dir / "stringtie_assemblies.txt"
     stringtie_merge_output_file = stringtie_dir / "annotation.gtf"
-    star_dir = output_dir / "star_output"
+    star_dir = Path(f"{output_dir}/star_output")
 
     if star_dir.exists() and len(list(star_dir.glob("*.bam"))) != 0:
         for sorted_bam_file in star_dir.glob("*.bam"):