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adding abundance semantics, closes #1575
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@pbuttigieg
pbuttigieg committed Dec 16, 2024
1 parent dc502a7 commit 6b99fc3
Showing 1 changed file with 130 additions and 4 deletions.
134 changes: 130 additions & 4 deletions src/envo/envo-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -3400,6 +3400,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002076>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002077>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002078>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002079>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002080>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002081>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002082>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002083>))
Expand All @@ -3425,6 +3426,20 @@ Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002102>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002103>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002104>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002105>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002106>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002107>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002108>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002109>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002110>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002111>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002112>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002113>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002114>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002115>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002116>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002117>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002118>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01002119>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01003000>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01003001>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01003002>))
Expand Down Expand Up @@ -38361,12 +38376,13 @@ AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibra
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002023> "count variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002023> <http://purl.obolibrary.org/obo/ENVO_01001996>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002024> (ecological taxon abundance variable)
# Class: <http://purl.obolibrary.org/obo/ENVO_01002024> (organism abundance variable)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01002024> "A count variable which represents the number of organisms belonging to a taxon in an ecosystem.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01002024> "A count variable which represents the number of organisms in an ecosystem.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002024> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002024> "2024-12-11T16:04:59Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002024> "ecological taxon abundance variable"@en)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002024> "organism abundance variable"@en)
EquivalentClasses(<http://purl.obolibrary.org/obo/ENVO_01002024> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_01002023> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/ENVO_01001998> ObjectUnionOf(<http://purl.obolibrary.org/obo/OBI_0100026> <http://purl.obolibrary.org/obo/PCO_0000000>))))
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002024> <http://purl.obolibrary.org/obo/ENVO_01002023>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002025> (biomass cover)
Expand Down Expand Up @@ -38865,6 +38881,13 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002079> "z
EquivalentClasses(<http://purl.obolibrary.org/obo/ENVO_01002079> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_01002026> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/ENVO_01001998> <http://purl.obolibrary.org/obo/ENVO_01002105>)))
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002079> <http://purl.obolibrary.org/obo/ENVO_01002026>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002080> (bird abundance variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002080> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002080> "2024-12-16T15:40:03Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002080> "bird abundance variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002080> <http://purl.obolibrary.org/obo/ENVO_01002024>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002081> (bird distribution)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01002081> "Taxonomic distribution which inheres in a population or community of organisms from the Class Aves.")
Expand Down Expand Up @@ -39068,6 +39091,110 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002105> "z
EquivalentClasses(<http://purl.obolibrary.org/obo/ENVO_01002105> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_01002025> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000080> <http://purl.obolibrary.org/obo/ENVO_01002009>)))
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002105> <http://purl.obolibrary.org/obo/ENVO_01002025>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002106> (coral abundance variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002106> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002106> "2024-12-16T15:40:03Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002106> "coral abundance variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002106> <http://purl.obolibrary.org/obo/ENVO_01002024>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002107> (hard coral abundance variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002107> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002107> "2024-12-16T15:40:03Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002107> "hard coral abundance variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002107> <http://purl.obolibrary.org/obo/ENVO_01002024>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002108> (fish abundance variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002108> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002108> "2024-12-16T15:40:03Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002108> "fish abundance variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002108> <http://purl.obolibrary.org/obo/ENVO_01002024>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002109> (invertebrate abundance variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002109> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002109> "2024-12-16T15:40:03Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002109> "invertebrate abundance variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002109> <http://purl.obolibrary.org/obo/ENVO_01002024>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002110> (macroalgal abundance variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002110> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002110> "2024-12-16T15:40:03Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002110> "macroalgal abundance variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002110> <http://purl.obolibrary.org/obo/ENVO_01002024>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002111> (mammal abundance variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002111> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002111> "2024-12-16T15:40:03Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002111> "mammal abundance variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002111> <http://purl.obolibrary.org/obo/ENVO_01002024>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002112> (mangrove abundance variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002112> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002112> "2024-12-16T15:40:03Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002112> "mangrove abundance variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002112> <http://purl.obolibrary.org/obo/ENVO_01002024>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002113> (microbial abundance variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002113> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002113> "2024-12-16T15:40:03Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002113> "microbial abundance variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002113> <http://purl.obolibrary.org/obo/ENVO_01002024>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002114> (phytoplankton abundance variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002114> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002114> "2024-12-16T15:40:03Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002114> "phytoplankton abundance variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002114> <http://purl.obolibrary.org/obo/ENVO_01002024>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002115> (seagrass abundance variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002115> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002115> "2024-12-16T15:40:03Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002115> "seagrass abundance variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002115> <http://purl.obolibrary.org/obo/ENVO_01002024>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002116> (turtle abundance variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002116> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002116> "2024-12-16T15:40:03Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002116> "turtle abundance variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002116> <http://purl.obolibrary.org/obo/ENVO_01002024>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002117> (zooplankton abundance variable)

AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002117> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002117> "2024-12-16T15:40:03Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002117> "zooplankton abundance variable"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002117> <http://purl.obolibrary.org/obo/ENVO_01002024>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002118> (multiplicity)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01002118> "A quality which inheres in a bearer by virtue of that bearer having more than one part of the same kind.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000116> <http://purl.obolibrary.org/obo/ENVO_01002118> "A domain conflict with http://purl.obolibrary.org/obo/PATO_0000070. See https://github.com/EnvironmentOntology/envo/issues/1575")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002118> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002118> "2024-12-16T17:08:09Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_01002118> "For example, the multiplicity of a population of larks with 10,000 individuals is 10,000. The quality inheres in the collection, with the individual organisms as parts of (members of) that collection.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002118> "multiplicity"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002118> <http://purl.obolibrary.org/obo/PATO_0000001>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01002119> (ecological abundance)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://en.wikipedia.org/wiki/Abundance_(ecology)>) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01002119> "A multiplicity which inheres in a collection of organisms by virtue of the number of its members in an ecosystem.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_01002119> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_01002119> "2024-12-16T17:12:15Z"^^xsd:dateTime)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym> <http://purl.obolibrary.org/obo/ENVO_01002119> "abundance")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/ENVO_01002119> "local abundance")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01002119> "ecological abundance"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01002119> <http://purl.obolibrary.org/obo/ENVO_01002118>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01003000> (spacecraft)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://en.wikipedia.org/wiki/Spacecraft>) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01003000> "A vehicle designed to fly in outer space."@en)
Expand Down Expand Up @@ -41785,7 +41912,6 @@ AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#has
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/ENVO_03000057> <https://orcid.org/0000-0002-4366-3088>)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/ENVO_03000057> "http://orcid.org/0000-0002-3410-4655")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0100001> <http://purl.obolibrary.org/obo/ENVO_03000057> "ENVO:03000044")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_03000057> <http://purl.obolibrary.org/obo/envo#envoPolar>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03000057> "obsolete sea ice formation process"@en)
AnnotationAssertion(owl:deprecated <http://purl.obolibrary.org/obo/ENVO_03000057> "true"^^xsd:boolean)

Expand Down

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