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@Erastova-group

Erastova Group

Realistic molecular models for natural minerals and materials for all!

Welcome to our GitHub!

We are a research group at the School of Chemistry, the University of Edinburgh, led by Dr Valentina Erastova.

Our interest is in getting to know what molecular compositions and structures make natural materials so unique, and how can we use them for the benefit of our society.

We are molecular modelers, and therefore, often develop codes and software to assist with the setup and analysis of our data, we also gather information into databases and build complex molecular systems. We value data transparency and believe in open science, and so we are keen to share our efforts and outputs -- which you will find here.

To help navigate the resources please see our GitHub Page: erastova-group.github.io

To learn more about our group, incl. any open positions: erastova.xyz

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  1. ClayCode ClayCode Public

    automate the setup of atomistic clay models for classical molecular dynamics simulations with GROMACS

    Python 5 1

  2. Biochar_MolecularModels Biochar_MolecularModels Public

    Molecular models of woody biochars at HTT 400C, 600C and 800C; and a collection of experimental property datasets for woody biochars

    Jupyter Notebook 4

  3. DynDen DynDen Public

    A software to assess convergence of molecular dynamics simulations of interfacial phenomena (and printing 🦖)

    Python 2

  4. Assemble Assemble Public

    a tool aimed at generating atomistic polymeric mixtures ready for simulation in Gromacs

    Python

Repositories

Showing 8 of 8 repositories
  • ClayCode Public

    automate the setup of atomistic clay models for classical molecular dynamics simulations with GROMACS

    Erastova-group/ClayCode’s past year of commit activity
    Python 5 MIT 1 21 1 Updated Jul 26, 2024
  • ClayCode-workshop Public

    RiP workshop files

    Erastova-group/ClayCode-workshop’s past year of commit activity
    CSS 0 GPL-2.0 0 0 0 Updated May 16, 2024
  • Biochar_MolecularModels Public

    Molecular models of woody biochars at HTT 400C, 600C and 800C; and a collection of experimental property datasets for woody biochars

    Erastova-group/Biochar_MolecularModels’s past year of commit activity
    Jupyter Notebook 4 0 0 0 Updated Apr 18, 2024
  • Porous_Biochars_Models Public

    Porous biochar molcular models created with Virtual Atom approach, representative of woody biochars produced at 600-650C.

    Erastova-group/Porous_Biochars_Models’s past year of commit activity
    0 0 0 0 Updated Jan 31, 2024
  • Erastova-group/erastova-group.github.io’s past year of commit activity
    SCSS 0 MIT 0 0 0 Updated Oct 19, 2023
  • .github Public
    Erastova-group/.github’s past year of commit activity
    0 0 0 0 Updated Jul 20, 2023
  • DynDen Public

    A software to assess convergence of molecular dynamics simulations of interfacial phenomena (and printing 🦖)

    Erastova-group/DynDen’s past year of commit activity
    Python 0 GPL-3.0 2 0 0 Updated May 15, 2023
  • Assemble Public

    a tool aimed at generating atomistic polymeric mixtures ready for simulation in Gromacs

    Erastova-group/Assemble’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Sep 23, 2021

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