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ontobot committed Sep 25, 2023
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Showing 10 changed files with 1,064 additions and 309 deletions.
179 changes: 144 additions & 35 deletions models/AOP_10.ttl
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223 changes: 186 additions & 37 deletions models/AOP_12.ttl
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20 changes: 10 additions & 10 deletions models/AOP_131.ttl
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Expand Up @@ -48,8 +48,8 @@
<http://purl.obolibrary.org/obo/PR_000003858> a <http://www.w3.org/2002/07/owl#Class> .

<http://www.co-ode.org/ontologies/ont.owl#aryl%20hydrocarbon%20receptor> <http://purl.obolibrary.org/obo/RO_0002327> <http://www.co-ode.org/ontologies/ont.owl#aryl%20hydrocarbon%20receptor%20activity> ;
<http://geneontology.org/lego/hint/layout/x> "93.75"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://geneontology.org/lego/hint/layout/y> "1644.5"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://geneontology.org/lego/hint/layout/x> "100.75"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://geneontology.org/lego/hint/layout/y> "1649.5"^^<http://www.w3.org/2001/XMLSchema#string> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://purl.obolibrary.org/obo/PR_000003858> ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0001-9356-3475"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2023-09-12"^^<http://www.w3.org/2001/XMLSchema#string> .
Expand All @@ -74,15 +74,15 @@
<http://purl.obolibrary.org/obo/PR_P79761> a <http://www.w3.org/2002/07/owl#Class> .

<http://www.co-ode.org/ontologies/ont.owl#cytochrome%20P450%201A2> <http://purl.obolibrary.org/obo/RO_0002327> <http://www.co-ode.org/ontologies/ont.owl#gene%20expression> ;
<http://geneontology.org/lego/hint/layout/x> "48.75"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://geneontology.org/lego/hint/layout/y> "1286.25"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://geneontology.org/lego/hint/layout/x> "143.75"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://geneontology.org/lego/hint/layout/y> "1295.25"^^<http://www.w3.org/2001/XMLSchema#string> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://purl.obolibrary.org/obo/PR_000006102> ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0001-9356-3475"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2023-09-12"^^<http://www.w3.org/2001/XMLSchema#string> .

<http://www.co-ode.org/ontologies/ont.owl#cytochrome%20P450%201A5%20%28chicken%29> <http://purl.obolibrary.org/obo/RO_0002327> <http://www.co-ode.org/ontologies/ont.owl#gene%20expression> ;
<http://geneontology.org/lego/hint/layout/x> "926.5"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://geneontology.org/lego/hint/layout/y> "1281.25"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://geneontology.org/lego/hint/layout/x> "832.5"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://geneontology.org/lego/hint/layout/y> "1289.25"^^<http://www.w3.org/2001/XMLSchema#string> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://purl.obolibrary.org/obo/PR_P79761> ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0001-9356-3475"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2023-09-12"^^<http://www.w3.org/2001/XMLSchema#string> .
Expand Down Expand Up @@ -134,28 +134,28 @@

<http://purl.org/dc/elements/1.1/date> a <http://www.w3.org/2002/07/owl#AnnotationProperty> .

_:t2602 <http://www.w3.org/2002/07/owl#annotatedProperty> <http://purl.obolibrary.org/obo/RO_0002212> ;
_:t2617 <http://www.w3.org/2002/07/owl#annotatedProperty> <http://purl.obolibrary.org/obo/RO_0002212> ;
<http://www.w3.org/2002/07/owl#annotatedSource> <http://www.co-ode.org/ontologies/ont.owl#uroporphyrinogen> ;
<http://www.w3.org/2002/07/owl#annotatedTarget> <http://www.co-ode.org/ontologies/ont.owl#catalytic%20activity> ;
a <http://www.w3.org/2002/07/owl#Axiom> ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0001-9356-3475"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2023-09-12"^^<http://www.w3.org/2001/XMLSchema#string> .

_:t2603 <http://www.w3.org/2002/07/owl#annotatedProperty> <http://purl.obolibrary.org/obo/RO_0002327> ;
_:t2618 <http://www.w3.org/2002/07/owl#annotatedProperty> <http://purl.obolibrary.org/obo/RO_0002327> ;
<http://www.w3.org/2002/07/owl#annotatedSource> <http://www.co-ode.org/ontologies/ont.owl#aryl%20hydrocarbon%20receptor> ;
<http://www.w3.org/2002/07/owl#annotatedTarget> <http://www.co-ode.org/ontologies/ont.owl#aryl%20hydrocarbon%20receptor%20activity> ;
a <http://www.w3.org/2002/07/owl#Axiom> ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0001-9356-3475"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2023-09-12"^^<http://www.w3.org/2001/XMLSchema#string> .

_:t2604 <http://www.w3.org/2002/07/owl#annotatedProperty> <http://purl.obolibrary.org/obo/RO_0002211> ;
_:t2619 <http://www.w3.org/2002/07/owl#annotatedProperty> <http://purl.obolibrary.org/obo/RO_0002211> ;
<http://www.w3.org/2002/07/owl#annotatedSource> <http://www.co-ode.org/ontologies/ont.owl#aryl%20hydrocarbon%20receptor%20activity> ;
<http://www.w3.org/2002/07/owl#annotatedTarget> <http://www.co-ode.org/ontologies/ont.owl#gene%20expression> ;
a <http://www.w3.org/2002/07/owl#Axiom> ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0001-9356-3475"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2023-09-12"^^<http://www.w3.org/2001/XMLSchema#string> .

_:t2605 <http://www.w3.org/2002/07/owl#annotatedProperty> <http://purl.obolibrary.org/obo/RO_0002428> ;
_:t2620 <http://www.w3.org/2002/07/owl#annotatedProperty> <http://purl.obolibrary.org/obo/RO_0002428> ;
<http://www.w3.org/2002/07/owl#annotatedSource> <http://www.co-ode.org/ontologies/ont.owl#gene%20expression> ;
<http://www.w3.org/2002/07/owl#annotatedTarget> <http://www.co-ode.org/ontologies/ont.owl#uroporphyrinogen> ;
a <http://www.w3.org/2002/07/owl#Axiom> ;
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26 changes: 14 additions & 12 deletions models/AOP_15.ttl
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Expand Up @@ -15,6 +15,8 @@

<http://purl.obolibrary.org/obo/RO_0019000> a <http://www.w3.org/2002/07/owl#ObjectProperty> .

<http://purl.obolibrary.org/obo/RO_0000057> a <http://www.w3.org/2002/07/owl#ObjectProperty> .

<http://purl.obolibrary.org/obo/RO_0002233> a <http://www.w3.org/2002/07/owl#ObjectProperty> .

<http://purl.obolibrary.org/obo/CHEBI_16991> a <http://www.w3.org/2002/07/owl#Class> .
Expand All @@ -27,39 +29,39 @@
<http://geneontology.org/lego/hint/layout/y> "350.25"^^<http://www.w3.org/2001/XMLSchema#string> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://purl.obolibrary.org/obo/CHEBI_16991> ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0001-9356-3475"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2023-09-08"^^<http://www.w3.org/2001/XMLSchema#string> .
<http://purl.org/dc/elements/1.1/date> "2023-09-15"^^<http://www.w3.org/2001/XMLSchema#string> .

<http://www.co-ode.org/ontologies/ont.owl#DNA%20alkylation> <http://purl.obolibrary.org/obo/RO_0002233> <http://www.co-ode.org/ontologies/ont.owl#deoxyribonucleic%20acid> ;
<http://geneontology.org/lego/hint/layout/x> "488.88330078125"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://geneontology.org/lego/hint/layout/y> "620.5"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.obolibrary.org/obo/RO_0002305> <http://www.co-ode.org/ontologies/ont.owl#DNA%20repair> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://purl.obolibrary.org/obo/GO_0006305> ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0001-9356-3475"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2023-09-08"^^<http://www.w3.org/2001/XMLSchema#string> .
<http://purl.org/dc/elements/1.1/date> "2023-09-15"^^<http://www.w3.org/2001/XMLSchema#string> .

<http://www.co-ode.org/ontologies/ont.owl#DNA%20repair> <http://purl.obolibrary.org/obo/RO_0002233> <http://www.co-ode.org/ontologies/ont.owl#deoxyribonucleic%20acid> ;
<http://geneontology.org/lego/hint/layout/x> "484.75"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://geneontology.org/lego/hint/layout/y> "365.25"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.obolibrary.org/obo/RO_0002412> <http://www.co-ode.org/ontologies/ont.owl#mutation> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://purl.obolibrary.org/obo/GO_0006281> ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0001-9356-3475"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2023-09-08"^^<http://www.w3.org/2001/XMLSchema#string> .
<http://purl.org/dc/elements/1.1/date> "2023-09-15"^^<http://www.w3.org/2001/XMLSchema#string> .

<http://id.nlm.nih.gov/mesh/D009154> a <http://www.w3.org/2002/07/owl#Class> .

<http://www.co-ode.org/ontologies/ont.owl#mutation> <http://purl.obolibrary.org/obo/RO_0002233> <http://www.co-ode.org/ontologies/ont.owl#deoxyribonucleic%20acid> ;
<http://www.co-ode.org/ontologies/ont.owl#mutation> <http://purl.obolibrary.org/obo/RO_0000057> <http://www.co-ode.org/ontologies/ont.owl#deoxyribonucleic%20acid> ;
<http://geneontology.org/lego/hint/layout/x> "482.88330078125"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://geneontology.org/lego/hint/layout/y> "124"^^<http://www.w3.org/2001/XMLSchema#string> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://id.nlm.nih.gov/mesh/D009154> ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0001-9356-3475"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2023-09-08"^^<http://www.w3.org/2001/XMLSchema#string> .
<http://purl.org/dc/elements/1.1/date> "2023-09-15"^^<http://www.w3.org/2001/XMLSchema#string> .

<https://noctua.apps.renci.org/model/AOP_15> <http://geneontology.org/lego/modelstate> "review"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://www.w3.org/2002/07/owl#versionIRI> <https://noctua.apps.renci.org/model/AOP_15> ;
a <http://www.w3.org/2002/07/owl#Ontology> ;
<http://purl.org/dc/elements/1.1/title> "Alkylation of DNA in male pre-meiotic germ cells leading to heritable mutations"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0001-9356-3475"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2023-09-08"^^<http://www.w3.org/2001/XMLSchema#string> .
<http://purl.org/dc/elements/1.1/date> "2023-09-15"^^<http://www.w3.org/2001/XMLSchema#string> .

<http://geneontology.org/lego/hint/layout/x> a <http://www.w3.org/2002/07/owl#AnnotationProperty> .

Expand All @@ -75,35 +77,35 @@

<http://purl.org/dc/elements/1.1/date> a <http://www.w3.org/2002/07/owl#AnnotationProperty> .

_:t2414 <http://www.w3.org/2002/07/owl#annotatedProperty> <http://purl.obolibrary.org/obo/RO_0002233> ;
_:t2749 <http://www.w3.org/2002/07/owl#annotatedProperty> <http://purl.obolibrary.org/obo/RO_0000057> ;
<http://www.w3.org/2002/07/owl#annotatedSource> <http://www.co-ode.org/ontologies/ont.owl#mutation> ;
<http://www.w3.org/2002/07/owl#annotatedTarget> <http://www.co-ode.org/ontologies/ont.owl#deoxyribonucleic%20acid> ;
a <http://www.w3.org/2002/07/owl#Axiom> ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0001-9356-3475"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2023-09-08"^^<http://www.w3.org/2001/XMLSchema#string> .
<http://purl.org/dc/elements/1.1/date> "2023-09-15"^^<http://www.w3.org/2001/XMLSchema#string> .

_:t2415 <http://www.w3.org/2002/07/owl#annotatedProperty> <http://purl.obolibrary.org/obo/RO_0002233> ;
_:t2750 <http://www.w3.org/2002/07/owl#annotatedProperty> <http://purl.obolibrary.org/obo/RO_0002233> ;
<http://www.w3.org/2002/07/owl#annotatedSource> <http://www.co-ode.org/ontologies/ont.owl#DNA%20alkylation> ;
<http://www.w3.org/2002/07/owl#annotatedTarget> <http://www.co-ode.org/ontologies/ont.owl#deoxyribonucleic%20acid> ;
a <http://www.w3.org/2002/07/owl#Axiom> ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0001-9356-3475"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2023-09-08"^^<http://www.w3.org/2001/XMLSchema#string> .

_:t2416 <http://www.w3.org/2002/07/owl#annotatedProperty> <http://purl.obolibrary.org/obo/RO_0002305> ;
_:t2751 <http://www.w3.org/2002/07/owl#annotatedProperty> <http://purl.obolibrary.org/obo/RO_0002305> ;
<http://www.w3.org/2002/07/owl#annotatedSource> <http://www.co-ode.org/ontologies/ont.owl#DNA%20alkylation> ;
<http://www.w3.org/2002/07/owl#annotatedTarget> <http://www.co-ode.org/ontologies/ont.owl#DNA%20repair> ;
a <http://www.w3.org/2002/07/owl#Axiom> ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0001-9356-3475"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2023-09-05"^^<http://www.w3.org/2001/XMLSchema#string> .

_:t2417 <http://www.w3.org/2002/07/owl#annotatedProperty> <http://purl.obolibrary.org/obo/RO_0002233> ;
_:t2752 <http://www.w3.org/2002/07/owl#annotatedProperty> <http://purl.obolibrary.org/obo/RO_0002233> ;
<http://www.w3.org/2002/07/owl#annotatedSource> <http://www.co-ode.org/ontologies/ont.owl#DNA%20repair> ;
<http://www.w3.org/2002/07/owl#annotatedTarget> <http://www.co-ode.org/ontologies/ont.owl#deoxyribonucleic%20acid> ;
a <http://www.w3.org/2002/07/owl#Axiom> ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0001-9356-3475"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2023-09-05"^^<http://www.w3.org/2001/XMLSchema#string> .

_:t2418 <http://www.w3.org/2002/07/owl#annotatedProperty> <http://purl.obolibrary.org/obo/RO_0002412> ;
_:t2753 <http://www.w3.org/2002/07/owl#annotatedProperty> <http://purl.obolibrary.org/obo/RO_0002412> ;
<http://www.w3.org/2002/07/owl#annotatedSource> <http://www.co-ode.org/ontologies/ont.owl#DNA%20repair> ;
<http://www.w3.org/2002/07/owl#annotatedTarget> <http://www.co-ode.org/ontologies/ont.owl#mutation> ;
a <http://www.w3.org/2002/07/owl#Axiom> ;
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