Upgrade Ruby and dependency gems #72
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| name: Yarn CI | |
| on: [pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Node.js | |
| uses: actions/setup-node@v3 | |
| with: | |
| node-version: '16.14.0' | |
| - name: Check versions | |
| run: | | |
| main_version=$(grep -E '^# 3DBIONOTES-WS v[0-9.]+' README.md | sed -E 's/^# 3DBIONOTES-WS v([0-9.]+)$/\1/') | |
| viewer_protvista_version=$(cat app/views/webserver/viewer.html.haml | grep -Eo 'protvista-pdb-[0-9.]+-est-[0-9]+(-beta.[0-9]+){0,1}' | awk '{print $1}') | |
| viewer_pdbe_molstar_version=$(cat app/views/webserver/viewer.html.haml | grep -Eo 'pdbe-molstar-plugin-[0-9.]+-est-[0-9]+(-beta.[0-9]+){0,1}' | awk '{print $1}') | |
| cd app/assets/javascripts/covid19 | |
| bio_covid19_version=$(cat package.json | jq -r '.version') | |
| cd ../3dbio_viewer | |
| bio_viewer_version=$(cat package.json | jq -r '.version') | |
| protvista_version=$(cat package.json | jq -r '.dependencies["@3dbionotes/protvista-pdb"]') | |
| pdbe_molstar_version=$(cat package.json | jq -r '.dependencies["@3dbionotes/pdbe-molstar"]') | |
| index_protvista_version=$(cat public/index.html | grep -Eo 'protvista-pdb-[0-9.]+-est-[0-9]+(-beta.[0-9]+){0,1}' | awk '{print $1}') | |
| index_pdbe_molstar_version=$(cat public/index.html | grep -Eo 'pdbe-molstar-plugin-[0-9.]+-est-[0-9]+(-beta.[0-9]+){0,1}' | awk '{print $1}') | |
| if [ "$bio_viewer_version" != "$bio_covid19_version" ] || | |
| [ "$main_version" != "$bio_covid19_version" ]; then | |
| echo "3dbio_viewer version doesn't match with covid19 version" | |
| echo "3dbio_viewer: $bio_viewer_version" | |
| echo "covid19: $bio_covid19_version" | |
| echo "README.md version: $main_version" | |
| exit 1 | |
| fi | |
| if [ "$viewer_protvista_version" != "$index_protvista_version" ] || | |
| [ "$viewer_pdbe_molstar_version" != "$index_pdbe_molstar_version" ] || | |
| [ "$(echo "$index_protvista_version" | sed 's/protvista-pdb-//')" != "$protvista_version" ] || | |
| [ "$(echo "$index_pdbe_molstar_version" | sed 's/pdbe-molstar-plugin-//')" != "$pdbe_molstar_version" ]; then | |
| echo "Versions don't match:" | |
| echo "Viewer and index protvista: $viewer_protvista_version, $index_protvista_version" | |
| echo "Viewer and index pdbe-molstar: $viewer_pdbe_molstar_version, $index_pdbe_molstar_version" | |
| echo "3dbio_viewer dependency and index protvista: $protvista_version, $(echo "$index_protvista_version" | sed 's/protvista-pdb-//')" | |
| echo "3dbio_viewer dependency and index pdbe-molstar: $pdbe_molstar_version, $(echo "$index_pdbe_molstar_version" | sed 's/pdbe-molstar-plugin-//'), " | |
| exit 1 | |
| fi | |
| echo "3dbio_viewer versions match" | |
| echo "README.md version: $main_version" | |
| echo "3DBIONOTES version: $bio_viewer_version" | |
| echo "protvista-pdb version: $protvista_version" | |
| echo "pdbe-molstar version: $pdbe_molstar_version" | |
| - name: Install and build (3dbio_viewer) | |
| run: | | |
| cd app/assets/javascripts/3dbio_viewer | |
| yarn install | |
| yarn build | |
| - name: Check build dependency versions (3dbioviewer) | |
| run: | | |
| cd app/assets/javascripts/3dbio_viewer | |
| index_protvista_version=$(cat public/index.html | grep -Eo 'protvista-pdb-[0-9.]+-est-[0-9]+(-beta.[0-9]+){0,1}' | awk '{print $1}') | |
| index_pdbe_molstar_version=$(cat public/index.html | grep -Eo 'pdbe-molstar-plugin-[0-9.]+-est-[0-9]+(-beta.[0-9]+){0,1}' | awk '{print $1}') | |
| build_pdbe_molstar_file="build/pdbe-molstar/$index_pdbe_molstar_version.js" | |
| if [ -f "$build_pdbe_molstar_file" ]; then | |
| echo "Build file $build_pdbe_molstar_file exists." | |
| else | |
| echo "Build file $build_pdbe_molstar_file does not exist." | |
| exit 1 | |
| fi | |
| build_protvista_file="build/protvista-pdb/$index_protvista_version.js" | |
| if [ -f "$build_protvista_file" ]; then | |
| echo "Build file $build_protvista_file exists." | |
| else | |
| echo "Build file $build_protvista_file does not exist." | |
| exit 1 | |
| fi | |
| - name: Run tests (3dbio_viewer) | |
| run: | | |
| cd app/assets/javascripts/3dbio_viewer | |
| yarn test:nowatch | |
| - name: Install and build (covid19) | |
| run: | | |
| cd app/assets/javascripts/covid19 | |
| yarn install | |
| yarn localize | |
| yarn build |