Remove extendProtVista, myProtvista, featureAnalysis, structure_viewe…

…r, interface_viewer

.gitignore

@@ -67,10 +67,6 @@ bak/
 .byebug_history
 public/assets/
 
-app/assets/javascripts/annotations_viewer/featureAnalysis/featuresAnalysis.bundle.js
-app/assets/javascripts/structure_viewer/viewer_class.bundle.js
-app/assets/javascripts/interface_viewer/interface_viewer.bundle.js
-
 # IDE Files
 .idea
 tsconfig.tsbuildinfo

README.md

@@ -124,62 +124,6 @@ The network sections run a set of jobs in the background on the server. To work
 $ RAILS_ENV=production bin/delayed_job -n 6 restart
 ```
 
-## Sub-modules
-
-The application contains two git sub-modules:
-
--   myProtVista
-
-    -   Repository: https://github.com/3dbionotes-community/myProtVista
-    -   Path: app/assets/javascripts/annotations_viewer/myProtVista
-    -   Installation dependencies: node version 8
-    -   How to install:
-        ```
-        $ npm install
-        $ npm run build
-        ```
-
--   extendProtVista
-    -   Repository: https://github.com/3dbionotes-community/extendProtVista
-    -   Path: app/assets/javascripts/annotations_viewer/extendProtVista
-    -   Installation dependencies: node version 8
-    -   How to install:
-        ```
-        $ npm install
-        $ npm run build
-        ```
-
-Some extra modules are also part of the application:
-
--   featureAnalysis
-
-    -   Path: app/assets/javascripts/annotations_viewer/featureAnalysis
-    -   Installation dependencies: node version 8
-    -   How to install:
-        ```
-        $ npm install
-        $ npm run build
-        ```
-
--   structure_viewer
-
-    -   Path: app/assets/javascripts/structure_viewer
-    -   Installation dependencies: node version 8
-    -   How to install:
-        ```
-        $ npm install
-        $ npm run build
-        ```
-
--   interface_viewer
-    -   Path: app/assets/javascripts/interface_viewer
-    -   Installation dependencies: node version 8
-    -   How to install:
-        ```
-        $ npm install
-        $ npm run build
-        ```
-
 ## Other dependencies
 
 -   ngl

app/assets/config/manifest.js

@@ -28,26 +28,10 @@
 //= link sequence_frame/sequence_init.js
 //= link sequence_frame/sequence_inter.js
 
-//= link jsmol_viewer/chimeraClass.js
-//= link jsmol_viewer/JSmolClass.js
-//= link jsmol_viewer/bionotes_jsmol.js
-
-//= link jsmol_frame/jsmol_style.css
-//= link jsmol_frame/jsmol_lib.js
-//= link jsmol_frame/jsmol_init.js
-//= link jsmol_frame/jsmol_inter.js
-
 //= link annotations_frame/annotations_lib.js
 //= link annotations_frame/annotations_init.js
 //= link annotations_frame/annotations_inter.js
 //= link annotations_frame/annotations_style.css
-//= link annotations_viewer/protvista.js
-//= link annotations_viewer/featuresAnalysis.bundle.js
-//= link annotations_viewer/analyse_data.js
-//= link annotations_viewer/extendProtVista.bundle.js
-//= link annotations_viewer/extend_data.js
-//= link annotations_viewer/uniprot_viewer_main.css
-//= link annotations_viewer/features_analysis.css
 
 //= link genomic_viewer/genefeaturesviewer.js
 //= link genomic_viewer/genomic_viewer_main.css
@@ -57,16 +41,6 @@
 //= link genomic_frame/genomic_init.js
 //= link genomic_frame/genomic_inter.js
 
-//= link ppi_frame/ppi_style.css
-//= link ppi_frame/cytoscape.min.js
-//= link ppi_frame/rhill-voronoi-core.js
-//= link ppi_frame/foograph.js
-//= link ppi_frame/ppi_lib.js
-//= link ppi_frame/ppi_init.js
-//= link ppi_frame/ppi_inter.js
-//= link ppi_frame/graph_class.js
-//= link interface_viewer/interface_viewer.bundle.js
-
 //= link webserver/webserver_style.css
 //= link webserver/w3.css
 //= link webserver/help_style.css