Skip to content

Web application for DHIS2 (open source, medical information system developped by Oslo University - https://www.dhis2.org/) made to simplify user access the terminology associated with information collected by MSF OCBA.

Notifications You must be signed in to change notification settings

EyeSeeTea/HMIS-Dictionary

 
 

Repository files navigation

HMIS Dictionary

(08/09/2017)

The HMIS Dictionary is made to simplify user access to terminology and details associated with the data model. The application counts 4 panels:

  • DataSets
  • Search (limited to the aggregated domain as of 1.0.0)
  • Programs
  • Custom 'Dossiers' (with additional configuration)

NB: HMIS refers to Health Information Management System

Panels

  • DataSets: displays the list of sections, data elements and associated category combos
  • Search: a search tool to access directly data elements (aggregate domain) and indicators
  • Programs: displays the list of sections, data elements with optionSets, Program indicators, Indicators, Tracked Entity Attributes, Program Rules, Program Rule Variables and Program Resources
  • Dossiers: displays list of data sets and indicator groups by 'service'
  • Admin: configuration of the Dossiers panel and 'service' concept

Configuration

The configuration relies on the following elements that have to be defined through the Maintenance app:

  • an organisationUnitGroupSet that gather all the elements of the typology of services,
  • the typology of services itself, each one is an organisationUnitGroup with a unique code: "OUG_HSV_#CODE#", their description are stored in tranlsations (description is only available in translations as of dhis v2.25),
  • then dataSets and indicatorGroups have one attribute, repectively "DS_#CODE1##CODE2#..." and "ING#CODE2#" that permits the direct association with the typology of services (association with multiple services is allowed),
  • finally the dataElements are associated via the sections to the dataSets and the indicators are associated directly to the indicatorGroups (dataElements outside of sections would not appear).
  • in indicators the descriptions of numerators and denominators cannot be translated (as of dhis v2.25) so the key words "NUM:" and "DENOM:" (both compulsory) are used in indicators descriptions (which have a translation).
  • an attribute for programs where the associated resources are referenced by ID in the following format: "(ID1;ID2;...)". This attribute has to have its code field set to: "HMIS-Dict_Resources".

Some elements are defined at the Admin panel:

  • The uid of the organisationUnitGroupSet
  • The name of the group of user with editing right in the Dossier panel and the Admin panel too
  • dataSets and indicatorGroups can be blacklisted

Some elements are still hardcoded:

Setup and Installation

Build the app running:

shell:~$ yarn install # first time only
shell:~$ yarn build

This will create a hmis-dictionary.zip file that can be manually installed in DHIS2 App Management.

Development

The above mentioned method of deploying the app is not suited for development. To deploy a local instance of the app use:

shell:~$ HOST=<address> PORT=<port> REACT_APP_DHIS2_BASE_URL=<dhis2_instance_url> REACT_APP_DHIS2_AUTH=<user:passwd> yarn start

For example:

shell:~$ HOST=localhost PORT=8082 REACT_APP_DHIS2_BASE_URL=http://localhost:8080 REACT_APP_DHIS2_AUTH='admin:district' yarn start

This deploys a http-server serving the app with a proxy to the DHIS2 instance to serve the DHIS2 API calls. The yarn start command reads the variables present in .env.local to start the local server. Use .env as a template to create it.

The app package manager has been migrated from bower to yarn with bower-away. The build-bower-deps.sh script is used as a postinstall script to make a copy of the necessary files to the bower_components folder to avoid uploading unnecessary files with the app build zip file.

Feedback

[email protected]

About

Web application for DHIS2 (open source, medical information system developped by Oslo University - https://www.dhis2.org/) made to simplify user access the terminology associated with information collected by MSF OCBA.

Resources

Stars

Watchers

Forks

Packages

No packages published

Languages

  • JavaScript 66.5%
  • HTML 29.3%
  • CSS 2.2%
  • Shell 2.0%